Difference between revisions of "RXN-8328"

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(Created page with "Category:reaction == Reaction RXN0-5107 == * direction: ** left-to-right * common-name: ** nucleotide diphosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.9 ec...")
(Created page with "Category:reaction == Reaction ORNDECARBOX-RXN == * direction: ** left-to-right * common-name: ** ornithine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-5107 ==
+
== Reaction ORNDECARBOX-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** nucleotide diphosphatase
+
** ornithine decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
+
** [http://enzyme.expasy.org/EC/4.1.1.17 ec-4.1.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[TTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TMP]][c]
+
* 1 [[L-ORNITHINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PUTRESCINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ13198]]
−
* Gene: [[SJ08856]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22529]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19894]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12166]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04934]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19893]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ08998]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16944]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07337]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-46]], putrescine biosynthesis III:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6305]], superpathway of putrescine biosynthesis:
 +
** '''4''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[ORNDEG-PWY]], superpathway of ornithine degradation:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28535 28535]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22965 22965]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00670 R00670]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P24169 P24169]
 +
** [http://www.uniprot.org/uniprot/P27121 P27121]
 +
** [http://www.uniprot.org/uniprot/P27116 P27116]
 +
** [http://www.uniprot.org/uniprot/P27120 P27120]
 +
** [http://www.uniprot.org/uniprot/P43099 P43099]
 +
** [http://www.uniprot.org/uniprot/Q9X2I6 Q9X2I6]
 +
** [http://www.uniprot.org/uniprot/P08432 P08432]
 +
** [http://www.uniprot.org/uniprot/P27118 P27118]
 +
** [http://www.uniprot.org/uniprot/P11926 P11926]
 +
** [http://www.uniprot.org/uniprot/P14019 P14019]
 +
** [http://www.uniprot.org/uniprot/P00860 P00860]
 +
** [http://www.uniprot.org/uniprot/P09057 P09057]
 +
** [http://www.uniprot.org/uniprot/Q9TZZ6 Q9TZZ6]
 +
** [http://www.uniprot.org/uniprot/P44317 P44317]
 +
** [http://www.uniprot.org/uniprot/O66940 O66940]
 +
** [http://www.uniprot.org/uniprot/P27119 P27119]
 +
** [http://www.uniprot.org/uniprot/P49725 P49725]
 +
** [http://www.uniprot.org/uniprot/P50134 P50134]
 +
** [http://www.uniprot.org/uniprot/P93351 P93351]
 +
** [http://www.uniprot.org/uniprot/P93357 P93357]
 +
** [http://www.uniprot.org/uniprot/O15696 O15696]
 +
** [http://www.uniprot.org/uniprot/Q84527 Q84527]
 +
** [http://www.uniprot.org/uniprot/P41931 P41931]
 +
** [http://www.uniprot.org/uniprot/O69865 O69865]
 +
** [http://www.uniprot.org/uniprot/Q9UQW9 Q9UQW9]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=nucleotide diphosphatase}}
+
{{#set: common-name=ornithine decarboxylase}}
−
{{#set: ec-number=ec-3.6.1.9}}
+
{{#set: ec-number=ec-4.1.1.17}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:33, 5 January 2021

Reaction ORNDECARBOX-RXN

  • direction:
    • left-to-right
  • common-name:
    • ornithine decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-46, putrescine biosynthesis III:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6305, superpathway of putrescine biosynthesis:
    • 4 reactions found over n.a reactions in the full pathway
  • ORNDEG-PWY, superpathway of ornithine degradation:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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