Difference between revisions of "RXN-8364"

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(Created page with "Category:reaction == Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN == * direction: ** left-to-right * common-name: ** succinate:quinone oxidoreductase * ec-number: ** [h...")
(Created page with "Category:reaction == Reaction LIPOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** linoleate 13s-lipoxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN ==
+
== Reaction LIPOXYGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** succinate:quinone oxidoreductase
+
** linoleate 13s-lipoxygenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.5.1 ec-1.3.5.1]
+
** [http://enzyme.expasy.org/EC/1.13.11.12 ec-1.13.11.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[SUC]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[FUM]][c] '''+''' 1 [[Ubiquinols]][c]
+
* 1 [[LINOLEIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[13-HYDROPEROXYOCTADECA-911-DIENOATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ16632]]
−
* Gene: [[SJ17484]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ03316]]
−
* Gene: [[SJ18770]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ08291]]
−
* Gene: [[SJ19480]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ16633]]
−
* Gene: [[SJ02694]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02118]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12567]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01012]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1353]], succinate to cytochrome bd oxidase electron transfer:
+
* [[PWY-5410]], traumatin and (Z)-3-hexen-1-yl acetate biosynthesis:
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-3781]], aerobic respiration I (cytochrome c):
+
* [[PWY-5409]], divinyl ether biosynthesis II:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY0-1329]], succinate to cytochrome bo oxidase electron transfer:
 
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13714 13714]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22781 22781]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02164 R02164]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03626 R03626]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P35720 P35720]
+
** [http://www.uniprot.org/uniprot/P09439 P09439]
−
** [http://www.uniprot.org/uniprot/Q26266 Q26266]
+
** [http://www.uniprot.org/uniprot/P08170 P08170]
−
** [http://www.uniprot.org/uniprot/P21913 P21913]
+
** [http://www.uniprot.org/uniprot/Q06327 Q06327]
−
** [http://www.uniprot.org/uniprot/Q9ZZR2 Q9ZZR2]
+
** [http://www.uniprot.org/uniprot/P38418 P38418]
−
** [http://www.uniprot.org/uniprot/P21911 P21911]
+
** [http://www.uniprot.org/uniprot/Q9S8X5 Q9S8X5]
−
** [http://www.uniprot.org/uniprot/Q9ZEA1 Q9ZEA1]
+
** [http://www.uniprot.org/uniprot/P09918 P09918]
−
** [http://www.uniprot.org/uniprot/Q9PI67 Q9PI67]
+
** [http://www.uniprot.org/uniprot/P14856 P14856]
−
** [http://www.uniprot.org/uniprot/P21912 P21912]
+
** [http://www.uniprot.org/uniprot/P24095 P24095]
−
** [http://www.uniprot.org/uniprot/P31040 P31040]
+
** [http://www.uniprot.org/uniprot/Q41244 Q41244]
−
** [http://www.uniprot.org/uniprot/Q9CQA3 Q9CQA3]
+
** [http://www.uniprot.org/uniprot/Q41245 Q41245]
−
** [http://www.uniprot.org/uniprot/P21801 P21801]
+
** [http://www.uniprot.org/uniprot/Q9S9D8 Q9S9D8]
−
** [http://www.uniprot.org/uniprot/P35721 P35721]
+
** [http://www.uniprot.org/uniprot/P27481 P27481]
−
** [http://www.uniprot.org/uniprot/P32420 P32420]
+
** [http://www.uniprot.org/uniprot/P27480 P27480]
−
** [http://www.uniprot.org/uniprot/Q00711 Q00711]
+
** [http://www.uniprot.org/uniprot/P29250 P29250]
−
** [http://www.uniprot.org/uniprot/P47052 P47052]
+
** [http://www.uniprot.org/uniprot/P37831 P37831]
−
** [http://www.uniprot.org/uniprot/P48932 P48932]
+
** [http://www.uniprot.org/uniprot/Q43817 Q43817]
−
** [http://www.uniprot.org/uniprot/P48934 P48934]
+
** [http://www.uniprot.org/uniprot/Q43800 Q43800]
−
** [http://www.uniprot.org/uniprot/P48935 P48935]
+
** [http://www.uniprot.org/uniprot/Q42710 Q42710]
−
** [http://www.uniprot.org/uniprot/P48933 P48933]
+
** [http://www.uniprot.org/uniprot/P29114 P29114]
−
** [http://www.uniprot.org/uniprot/P73723 P73723]
+
** [http://www.uniprot.org/uniprot/Q42846 Q42846]
−
** [http://www.uniprot.org/uniprot/P80481 P80481]
+
** [http://www.uniprot.org/uniprot/Q42847 Q42847]
−
** [http://www.uniprot.org/uniprot/P80482 P80482]
+
** [http://www.uniprot.org/uniprot/P93184 P93184]
−
** [http://www.uniprot.org/uniprot/P80480 P80480]
+
** [http://www.uniprot.org/uniprot/P93190 P93190]
−
** [http://www.uniprot.org/uniprot/Q9T584 Q9T584]
+
** [http://www.uniprot.org/uniprot/Q41520 Q41520]
−
** [http://www.uniprot.org/uniprot/P80479 P80479]
+
** [http://www.uniprot.org/uniprot/P38416 P38416]
−
** [http://www.uniprot.org/uniprot/P80478 P80478]
+
** [http://www.uniprot.org/uniprot/Q42873 Q42873]
−
** [http://www.uniprot.org/uniprot/Q09508 Q09508]
+
** [http://www.uniprot.org/uniprot/Q43438 Q43438]
−
** [http://www.uniprot.org/uniprot/Q59659 Q59659]
+
** [http://www.uniprot.org/uniprot/Q43440 Q43440]
−
** [http://www.uniprot.org/uniprot/Q9UTJ7 Q9UTJ7]
+
** [http://www.uniprot.org/uniprot/O24295 O24295]
−
* PIR:
+
** [http://www.uniprot.org/uniprot/Q42780 Q42780]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T50081 T50081]
+
** [http://www.uniprot.org/uniprot/O24470 O24470]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46878 T46878]
+
** [http://www.uniprot.org/uniprot/Q43501 Q43501]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41753 T41753]
+
** [http://www.uniprot.org/uniprot/Q43446 Q43446]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T37633 T37633]
+
** [http://www.uniprot.org/uniprot/O49878 O49878]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11245 T11245]
+
** [http://www.uniprot.org/uniprot/O49880 O49880]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11229 T11229]
+
** [http://www.uniprot.org/uniprot/O24370 O24370]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11218 T11218]
+
** [http://www.uniprot.org/uniprot/O24371 O24371]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78180 S78180]
+
** [http://www.uniprot.org/uniprot/Q41430 Q41430]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78179 S78179]
+
** [http://www.uniprot.org/uniprot/Q96573 Q96573]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78178 S78178]
+
** [http://www.uniprot.org/uniprot/Q96574 Q96574]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74810 S74810]
+
** [http://www.uniprot.org/uniprot/P38417 P38417]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62756 S62756]
+
** [http://www.uniprot.org/uniprot/Q39874 Q39874]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62755 S62755]
+
** [http://www.uniprot.org/uniprot/Q39875 Q39875]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59115 S59115]
+
** [http://www.uniprot.org/uniprot/Q43191 Q43191]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59114 S59114]
+
** [http://www.uniprot.org/uniprot/Q39611 Q39611]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56817 S56817]
+
** [http://www.uniprot.org/uniprot/Q42705 Q42705]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S34793 S34793]
+
** [http://www.uniprot.org/uniprot/P93698 P93698]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26978 S26978]
+
** [http://www.uniprot.org/uniprot/O24320 O24320]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S25968 S25968]
+
** [http://www.uniprot.org/uniprot/O04919 O04919]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=RDBYIS RDBYIS]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PT0094 PT0094]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0336 JX0336]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38895 I38895]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81388 D81388]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D71712 D71712]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D32394 D32394]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C32394 C32394]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B58930 B58930]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B32394 B32394]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56660 A56660]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A45159 A45159]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A42792 A42792]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=succinate:quinone oxidoreductase}}
+
{{#set: common-name=linoleate 13s-lipoxygenase}}
−
{{#set: ec-number=ec-1.3.5.1}}
+
{{#set: ec-number=ec-1.13.11.12}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:00, 14 January 2021

Reaction LIPOXYGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • linoleate 13s-lipoxygenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5410, traumatin and (Z)-3-hexen-1-yl acetate biosynthesis:
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5409, divinyl ether biosynthesis II:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-8364&oldid=101249"