Difference between revisions of "RXN-8497"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ECH_LPAREN_3hmbcoa_RPAREN_ ECH_LPAREN_3hmbcoa_RPAREN_] == * direction: ** left-to-right * common-na...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == * direction: ** left-to-right * common-name: ** biotin synthase * ec-nu...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** biotin synthase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1.6] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ16348]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22061 22061] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3] | ||
+ | ** [http://www.uniprot.org/uniprot/P53557 P53557] | ||
+ | ** [http://www.uniprot.org/uniprot/O67104 O67104] | ||
+ | ** [http://www.uniprot.org/uniprot/P44987 P44987] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58692 Q58692] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A506 P0A506] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3] | ||
+ | ** [http://www.uniprot.org/uniprot/P46396 P46396] | ||
+ | ** [http://www.uniprot.org/uniprot/Q47862 Q47862] | ||
+ | ** [http://www.uniprot.org/uniprot/P19206 P19206] | ||
+ | ** [http://www.uniprot.org/uniprot/P32451 P32451] | ||
+ | ** [http://www.uniprot.org/uniprot/P54967 P54967] | ||
+ | ** [http://www.uniprot.org/uniprot/P46715 P46715] | ||
+ | ** [http://www.uniprot.org/uniprot/P73538 P73538] | ||
+ | ** [http://www.uniprot.org/uniprot/P12996 P12996] | ||
+ | ** [http://www.uniprot.org/uniprot/O59778 O59778] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=biotin synthase}} |
+ | {{#set: ec-number=ec-2.8.1.6}} | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:30, 27 August 2019
Contents
Reaction 2.8.1.6-RXN
- direction:
- left-to-right
- common-name:
- biotin synthase
- ec-number:
Reaction formula
- 1 DETHIOBIOTIN[c] + 2 Reduced-2Fe-2S-Ferredoxins[c] + 2 S-ADENOSYLMETHIONINE[c] + 1 Sulfurated-Sulfur-Acceptors[c] => 1 BIOTIN[c] + 2 CH33ADO[c] + 2 MET[c] + 2 Oxidized-2Fe-2S-Ferredoxins[c] + 1 Unsulfurated-Sulfur-Acceptors[c]
Gene(s) associated with this reaction
- Gene: SJ16348
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
- 3 reactions found over 3 reactions in the full pathway
- PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links