Difference between revisions of "RXN-8582"

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(Created page with "Category:reaction == Reaction 2.3.1.168-RXN == * direction: ** reversible * common-name: ** dihydrolipoyllysine-residue (2-methylpropanoyl)transferase * ec-number: ** [htt...")
(Created page with "Category:reaction == Reaction RETINOL-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** all-trans-retinol dehydrogenase (nad) ** all-trans-retinol dehydrog...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.3.1.168-RXN ==
+
== Reaction RETINOL-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** dihydrolipoyllysine-residue (2-methylpropanoyl)transferase
+
** all-trans-retinol dehydrogenase (nad)
 +
** all-trans-retinol dehydrogenase
 +
** retinol dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.168 ec-2.3.1.168]
+
** [http://enzyme.expasy.org/EC/1.1.1.105 ec-1.1.1.105]
 +
* synonymous:
 +
** retinal reductase
 +
** all-trans retinol dehydrogenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[BCAA-dehydrogenase-DH-lipoyl]][c] '''+''' 1 [[ISOBUTYRYL-COA]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CO-A]][c]
+
* 1 [[CPD-13524]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[RETINAL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11016]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ05274]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21322]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12574]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05276]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05277]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02723]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21312]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19151]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20291]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ11017]]
+
* Gene: [[SJ21601]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10028]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05275]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21287 21287]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02662 R02662]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02124 R02124]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P50169 P50169]
 +
** [http://www.uniprot.org/uniprot/Q64437 Q64437]
 +
** [http://www.uniprot.org/uniprot/P40394 P40394]
 +
** [http://www.uniprot.org/uniprot/P50170 P50170]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=dihydrolipoyllysine-residue (2-methylpropanoyl)transferase}}
+
{{#set: common-name=all-trans-retinol dehydrogenase (nad)|all-trans-retinol dehydrogenase|retinol dehydrogenase}}
−
{{#set: ec-number=ec-2.3.1.168}}
+
{{#set: ec-number=ec-1.1.1.105}}
−
{{#set: nb gene associated=2}}
+
{{#set: synonymous=all-trans retinol dehydrogenase|retinal reductase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=12}}
 +
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:16, 14 January 2021

Reaction RETINOL-DEHYDROGENASE-RXN

  • direction:
    • reversible
  • common-name:
    • all-trans-retinol dehydrogenase (nad)
    • all-trans-retinol dehydrogenase
    • retinol dehydrogenase
  • ec-number:
  • synonymous:
    • retinal reductase
    • all-trans retinol dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links






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