Difference between revisions of "RXN-8630"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] == * direction: ** reversible * common-name: ** isocitrate lyase...")
(Created page with "Category:reaction == Reaction RXN0-6977 == * direction: ** left-to-right * common-name: ** cytosolic dipeptidase * ec-number: ** [http://enzyme.expasy.org/EC/3.4.13.18 ec-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] ==
+
== Reaction RXN0-6977 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** isocitrate lyase
+
** cytosolic dipeptidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1.3.1]
+
** [http://enzyme.expasy.org/EC/3.4.13.18 ec-3.4.13.18]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[ALA-GLY]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLY]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10623]]
+
* Gene: [[SJ11013]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02830]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05932]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05283]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13248 13248]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=36468 36468]
−
* PIR:
+
{{#set: direction=left-to-right}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
+
{{#set: common-name=cytosolic dipeptidase}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
+
{{#set: ec-number=ec-3.4.13.18}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
+
{{#set: nb gene associated=1}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
+
{{#set: nb pathway associated=0}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
+
{{#set: reconstruction category=annotation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P28467 P28467]
 
−
** [http://www.uniprot.org/uniprot/P42449 P42449]
 
−
** [http://www.uniprot.org/uniprot/P20699 P20699]
 
−
** [http://www.uniprot.org/uniprot/O13439 O13439]
 
−
** [http://www.uniprot.org/uniprot/P28299 P28299]
 
−
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
 
−
** [http://www.uniprot.org/uniprot/P46831 P46831]
 
−
** [http://www.uniprot.org/uniprot/O24588 O24588]
 
−
** [http://www.uniprot.org/uniprot/P49297 P49297]
 
−
** [http://www.uniprot.org/uniprot/P45456 P45456]
 
−
** [http://www.uniprot.org/uniprot/P45457 P45457]
 
−
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
 
−
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
 
−
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
 
−
** [http://www.uniprot.org/uniprot/P28240 P28240]
 
−
** [http://www.uniprot.org/uniprot/P20014 P20014]
 
−
** [http://www.uniprot.org/uniprot/P17069 P17069]
 
−
** [http://www.uniprot.org/uniprot/P15479 P15479]
 
−
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
 
−
** [http://www.uniprot.org/uniprot/P25248 P25248]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=isocitrate lyase}}
 
−
{{#set: ec-number=ec-4.1.3.1}}
 
−
{{#set: nb gene associated=4}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:40, 18 December 2020

Reaction RXN0-6977

  • direction:
    • left-to-right
  • common-name:
    • cytosolic dipeptidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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