Difference between revisions of "RXN-8655"

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(Created page with "Category:reaction == Reaction ALCOHOL-DEHYDROGENASE-NADPORNOP+-RXN == * direction: ** left-to-right * common-name: ** alcohol dehydrogenase (nadp+) ** aldehyde reductase *...")
(Created page with "Category:reaction == Reaction DTMPKI-RXN == * direction: ** left-to-right * common-name: ** dtmp kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ALCOHOL-DEHYDROGENASE-NADPORNOP+-RXN ==
+
== Reaction DTMPKI-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** alcohol dehydrogenase (nadp+)
+
** dtmp kinase
−
** aldehyde reductase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.2 ec-1.1.1.2]
+
** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]
 +
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 +
** [http://enzyme.expasy.org/EC/2.7.4.9 ec-2.7.4.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Aldehydes]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ01455]]
−
* Gene: [[SJ06470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06456]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05644]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13034]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12574]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07103]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10501]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19151]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 +
** '''14''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97804
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15940 15940]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13518 13518]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07328 R07328]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P14941 P14941]
+
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
−
** [http://www.uniprot.org/uniprot/P14550 P14550]
+
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
−
** [http://www.uniprot.org/uniprot/P35630 P35630]
+
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
−
** [http://www.uniprot.org/uniprot/Q9PMC1 Q9PMC1]
+
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
−
** [http://www.uniprot.org/uniprot/O06007 O06007]
+
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
−
** [http://www.uniprot.org/uniprot/Q7M0Z4 Q7M0Z4]
+
** [http://www.uniprot.org/uniprot/P33803 P33803]
−
** [http://www.uniprot.org/uniprot/P75691 P75691]
+
** [http://www.uniprot.org/uniprot/P42490 P42490]
−
** [http://www.uniprot.org/uniprot/P0A4X0 P0A4X0]
+
** [http://www.uniprot.org/uniprot/P00572 P00572]
−
** [http://www.uniprot.org/uniprot/P0A4X1 P0A4X1]
+
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
−
** [http://www.uniprot.org/uniprot/Q7M543 Q7M543]
+
** [http://www.uniprot.org/uniprot/P68693 P68693]
−
** [http://www.uniprot.org/uniprot/Q7M544 Q7M544]
+
** [http://www.uniprot.org/uniprot/P23919 P23919]
−
** [http://www.uniprot.org/uniprot/P25377 P25377]
+
** [http://www.uniprot.org/uniprot/P36590 P36590]
−
** [http://www.uniprot.org/uniprot/Q04894 Q04894]
+
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
−
** [http://www.uniprot.org/uniprot/P77990 P77990]
+
** [http://www.uniprot.org/uniprot/O81650 O81650]
−
** [http://www.uniprot.org/uniprot/P75214 P75214]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=aldehyde reductase|alcohol dehydrogenase (nadp+)}}
+
{{#set: common-name=dtmp kinase}}
−
{{#set: ec-number=ec-1.1.1.2}}
+
{{#set: ec-number=ec-2.7.4.12|ec-2.7.4.9|ec-2.7.4.13}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 08:39, 15 March 2021

Reaction DTMPKI-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 14 reactions found over 13 reactions in the full pathway
  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP:
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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