Difference between revisions of "RXN-8655"

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(Created page with "Category:reaction == Reaction DTMPKI-RXN == * direction: ** left-to-right * common-name: ** dtmp kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]...")
(Created page with "Category:reaction == Reaction RXN-8655 == * direction: ** left-to-right * common-name: ** lipoyl-adenylate--protein ligase ** lipoate-protein ligase == Reaction formula ==...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DTMPKI-RXN ==
+
== Reaction RXN-8655 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dtmp kinase
+
** lipoyl-adenylate--protein ligase
−
* ec-number:
+
** lipoate-protein ligase
−
** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]
 
−
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 
−
** [http://enzyme.expasy.org/EC/2.7.4.9 ec-2.7.4.9]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
+
* 1 [[LIPOYL-AMP]][c] '''+''' 1 [[Lipoyl-Protein-L-Lysine]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01455]]
+
* Gene: [[SJ11692]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04393]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06657]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ03663]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
+
* [[PWY0-522]], lipoate salvage I:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 
−
** '''14''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR122414
−
* METANETX-RXN : MNXR97804
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20474 20474]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07771 R07771]
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13518 13518]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
 
−
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
 
−
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
 
−
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
 
−
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
 
−
** [http://www.uniprot.org/uniprot/P33803 P33803]
 
−
** [http://www.uniprot.org/uniprot/P42490 P42490]
 
−
** [http://www.uniprot.org/uniprot/P00572 P00572]
 
−
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
 
−
** [http://www.uniprot.org/uniprot/P68693 P68693]
 
−
** [http://www.uniprot.org/uniprot/P23919 P23919]
 
−
** [http://www.uniprot.org/uniprot/P36590 P36590]
 
−
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
 
−
** [http://www.uniprot.org/uniprot/O81650 O81650]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dtmp kinase}}
+
{{#set: common-name=lipoate-protein ligase|lipoyl-adenylate--protein ligase}}
−
{{#set: ec-number=ec-2.7.4.12|ec-2.7.4.9|ec-2.7.4.13}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=7}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-8655

  • direction:
    • left-to-right
  • common-name:
    • lipoyl-adenylate--protein ligase
    • lipoate-protein ligase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-522, lipoate salvage I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR122414
  • RHEA:
  • LIGAND-RXN:





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