Difference between revisions of "RXN-8660"

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(Created page with "Category:reaction == Reaction ExchangeSeed-COB-I-ALAMIN == * direction: ** reversible == Reaction formula == * 1.0 COB-I-ALAMIN[C-BOUNDARY] '''<=>''' 1.0 COB-I-ALAMI...")
(Created page with "Category:reaction == Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN == * direction: ** left-to-right * common-name: ** deoxyribodipyrimidine photolyase * ec-number: ** [htt...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-COB-I-ALAMIN ==
+
== Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** deoxyribodipyrimidine photolyase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.99.3 ec-4.1.99.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[COB-I-ALAMIN]][C-BOUNDARY] '''<=>''' 1.0 [[COB-I-ALAMIN]][e]
+
* 1 [[DNA-deoxycytidine-thymidine-dimer]][c] '''+''' 1 [[Light]][c] '''=>''' 1 [[DNA-Cytidines]][c] '''+''' 1 [[DNA-thymidines]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ08112]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04101]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13192]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=0}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00034 R00034]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P12769 P12769]
 +
** [http://www.uniprot.org/uniprot/Q9JSP8 Q9JSP8]
 +
** [http://www.uniprot.org/uniprot/Q9HQ46 Q9HQ46]
 +
** [http://www.uniprot.org/uniprot/P12768 P12768]
 +
** [http://www.uniprot.org/uniprot/P27526 P27526]
 +
** [http://www.uniprot.org/uniprot/P25078 P25078]
 +
** [http://www.uniprot.org/uniprot/Q43125 Q43125]
 +
** [http://www.uniprot.org/uniprot/P40115 P40115]
 +
** [http://www.uniprot.org/uniprot/Q28811 Q28811]
 +
** [http://www.uniprot.org/uniprot/Q24443 Q24443]
 +
** [http://www.uniprot.org/uniprot/Q91186 Q91186]
 +
** [http://www.uniprot.org/uniprot/Q42696 Q42696]
 +
** [http://www.uniprot.org/uniprot/P05066 P05066]
 +
** [http://www.uniprot.org/uniprot/O24020 O24020]
 +
** [http://www.uniprot.org/uniprot/O24374 O24374]
 +
** [http://www.uniprot.org/uniprot/P00914 P00914]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=deoxyribodipyrimidine photolyase}}
 +
{{#set: ec-number=ec-4.1.99.3}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:27, 15 January 2021

Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • deoxyribodipyrimidine photolyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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