Difference between revisions of "RXN-8660"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P241-PWY P241-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-183988 tax-...")
(Created page with "Category:reaction == Reaction RXN-8660 == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demethylase ** histone demethylase activity (h3-k36 specif...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P241-PWY P241-PWY] ==
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== Reaction RXN-8660 ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-183988 tax-183988]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-224756 tax-224756]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-183939 tax-183939]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-183925 tax-183925]
 
 
* common-name:
 
* common-name:
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** coenzyme b biosynthesis
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** [histone-h3]-lysine-36 demethylase
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== Reaction(s) found ==
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** histone demethylase activity (h3-k36 specific)
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* [[HOMOACONITATE-HYDRATASE-RXN]]
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* synonymous:
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== Reaction(s) not found ==
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** jhdm1a
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* [http://metacyc.org/META/NEW-IMAGE?object=R226-RXN R226-RXN]
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** jmjc domain-containing histone demethylase 1a
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* [http://metacyc.org/META/NEW-IMAGE?object=R212-RXN R212-RXN]
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** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
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* [http://metacyc.org/META/NEW-IMAGE?object=R218-RXN R218-RXN]
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** h3-k36-specific demethylase
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* [http://metacyc.org/META/NEW-IMAGE?object=R224-RXN R224-RXN]
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** histone demethylase
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* [http://metacyc.org/META/NEW-IMAGE?object=R216-RXN R216-RXN]
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** histone-lysine (h3-k36) demethylase
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* [http://metacyc.org/META/NEW-IMAGE?object=R225-RXN R225-RXN]
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R214-RXN R214-RXN]
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8900]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[SUC]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=R215-RXN R215-RXN]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R217-RXN R217-RXN]
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* Gene: [[SJ19354]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R211-RXN R211-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R213-RXN R213-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=HOMOCITRATE-SYNTHASE-RXN HOMOCITRATE-SYNTHASE-RXN]
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* Gene: [[SJ00708]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R227-RXN R227-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7970 RXN-7970]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1983 RXN3O-1983]
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* Gene: [[SJ19102]]
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{{#set: taxonomic-range=tax-224756|tax-183925|tax-183988|tax-183939}}
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** Category: [[annotation]]
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{{#set: common-name=coenzyme b biosynthesis}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction found=1}}
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* Gene: [[SJ05371]]
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{{#set: completion rate=0.06}}
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** Category: [[annotation]]
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{{#set: nb total reaction=16}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ13421]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ18735]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Pathway(s)  ==
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR122415
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21789 21789]
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{{#set: direction=left-to-right}}
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{{#set: common-name=histone demethylase activity (h3-k36 specific)|[histone-h3]-lysine-36 demethylase}}
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{{#set: synonymous=protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jhdm1a|histone demethylase|h3-k36-specific demethylase|jmjc domain-containing histone demethylase 1a|histone-lysine (h3-k36) demethylase}}
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{{#set: nb gene associated=6}}
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{{#set: nb pathway associated=0}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-8660

  • direction:
    • left-to-right
  • common-name:
    • [histone-h3]-lysine-36 demethylase
    • histone demethylase activity (h3-k36 specific)
  • synonymous:
    • jhdm1a
    • jmjc domain-containing histone demethylase 1a
    • protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
    • h3-k36-specific demethylase
    • histone demethylase
    • histone-lysine (h3-k36) demethylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR122415
  • RHEA:

Property "Common-name" (as page type) with input value "histone-h3]-lysine-36 demethylase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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