Difference between revisions of "RXN-8660"

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(Created page with "Category:reaction == Reaction ExchangeSeed-COB-I-ALAMIN == * direction: ** reversible == Reaction formula == * 1.0 COB-I-ALAMIN[C-BOUNDARY] '''<=>''' 1.0 COB-I-ALAMI...")
(Created page with "Category:reaction == Reaction RXN-8660 == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demethylase ** histone demethylase activity (h3-k36 specif...")
 
(3 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-COB-I-ALAMIN ==
+
== Reaction RXN-8660 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** [histone-h3]-lysine-36 demethylase
 +
** histone demethylase activity (h3-k36 specific)
 +
* synonymous:
 +
** jhdm1a
 +
** jmjc domain-containing histone demethylase 1a
 +
** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 +
** h3-k36-specific demethylase
 +
** histone demethylase
 +
** histone-lysine (h3-k36) demethylase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[COB-I-ALAMIN]][C-BOUNDARY] '''<=>''' 1.0 [[COB-I-ALAMIN]][e]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8900]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ19354]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00708]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19102]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05371]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13421]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18735]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* METANETX-RXN : MNXR122415
−
{{#set: nb gene associated=0}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21789 21789]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=histone demethylase activity (h3-k36 specific)|[histone-h3]-lysine-36 demethylase}}
 +
{{#set: synonymous=protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jhdm1a|histone demethylase|h3-k36-specific demethylase|jmjc domain-containing histone demethylase 1a|histone-lysine (h3-k36) demethylase}}
 +
{{#set: nb gene associated=6}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-8660

  • direction:
    • left-to-right
  • common-name:
    • [histone-h3]-lysine-36 demethylase
    • histone demethylase activity (h3-k36 specific)
  • synonymous:
    • jhdm1a
    • jmjc domain-containing histone demethylase 1a
    • protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
    • h3-k36-specific demethylase
    • histone demethylase
    • histone-lysine (h3-k36) demethylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR122415
  • RHEA:

Property "Common-name" (as page type) with input value "histone-h3]-lysine-36 demethylase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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