Difference between revisions of "RXN-8660"

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(Created page with "Category:reaction == Reaction RXN-12184 == * direction: ** left-to-right * common-name: ** 7-hydroxylauroyl-coa synthetase ** long-chain fatty acid-coa ligase * ec-number:...")
(Created page with "Category:reaction == Reaction 2.1.1.5-RXN == * direction: ** left-to-right * common-name: ** betaine-homocysteine s-methyltransferase * ec-number: ** [http://enzyme.expasy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12184 ==
+
== Reaction 2.1.1.5-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 7-hydroxylauroyl-coa synthetase
+
** betaine-homocysteine s-methyltransferase
−
** long-chain fatty acid-coa ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/2.1.1.5 ec-2.1.1.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-17637]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-17638]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[BETAINE]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[MET]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07112]]
−
* Gene: [[SJ08690]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03650]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13972]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05591]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ08692]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ08691]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6733]], sporopollenin precursors biosynthesis:
+
* [[PWY-3661]], glycine betaine degradation I:
−
** '''8''' reactions found over '''18''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-3661-1]], glycine betaine degradation II (mammalian):
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22337 22337]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02821 R02821]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=long-chain fatty acid-coa ligase|7-hydroxylauroyl-coa synthetase}}
+
{{#set: common-name=betaine-homocysteine s-methyltransferase}}
−
{{#set: ec-number=ec-6.2.1.3}}
+
{{#set: ec-number=ec-2.1.1.5}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:37, 5 January 2021

Reaction 2.1.1.5-RXN

  • direction:
    • left-to-right
  • common-name:
    • betaine-homocysteine s-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3661, glycine betaine degradation I:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-3661-1, glycine betaine degradation II (mammalian):
    • 2 reactions found over 4 reactions in the full pathway
  • ADENOSYLHOMOCYSCAT-PWY, L-methionine salvage from L-homocysteine:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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