Difference between revisions of "RXN-8672"

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(Created page with "Category:reaction == Reaction RXN-14275 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.m19 ec-1.1.1.m19] == Reaction formula == * 1 ...")
(Created page with "Category:reaction == Reaction HOMOCYSMET-RXN == * direction: ** reversible * common-name: ** cobalamin-independent homocysteine transmethylase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14275 ==
+
== Reaction HOMOCYSMET-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** cobalamin-independent homocysteine transmethylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.m19 ec-1.1.1.m19]
+
** [http://enzyme.expasy.org/EC/2.1.1.14 ec-2.1.1.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-14916]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD0-2106]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-1302]][c] '''+''' 1 [[HOMO-CYS]][c] '''<=>''' 1 [[CPD-1301]][c] '''+''' 1 [[MET]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ03226]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10794]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered):
+
* [[PWY-702]], L-methionine biosynthesis II:
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5041]], S-adenosyl-L-methionine salvage II:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6151]], S-adenosyl-L-methionine salvage I:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR101555
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31196 31196]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21199 21199]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04745 R04745]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04405 R04405]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: ec-number=ec-1.1.1.m19}}
+
** [http://www.uniprot.org/uniprot/P25665 P25665]
−
{{#set: nb gene associated=0}}
+
** [http://www.uniprot.org/uniprot/P45331 P45331]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9PN94 Q9PN94]
−
{{#set: reconstruction category=gap-filling}}
+
** [http://www.uniprot.org/uniprot/O26869 O26869]
−
{{#set: reconstruction tool=meneco}}
+
** [http://www.uniprot.org/uniprot/Q9JUT6 Q9JUT6]
−
{{#set: reconstruction comment=added for gapfilling}}
+
** [http://www.uniprot.org/uniprot/Q9CG55 Q9CG55]
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
** [http://www.uniprot.org/uniprot/P05694 P05694]
 +
** [http://www.uniprot.org/uniprot/Q42699 Q42699]
 +
** [http://www.uniprot.org/uniprot/Q39586 Q39586]
 +
** [http://www.uniprot.org/uniprot/O48613 O48613]
 +
** [http://www.uniprot.org/uniprot/P93263 P93263]
 +
** [http://www.uniprot.org/uniprot/Q9UT19 Q9UT19]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=cobalamin-independent homocysteine transmethylase}}
 +
{{#set: ec-number=ec-2.1.1.14}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=5}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 08:32, 15 March 2021

Reaction HOMOCYSMET-RXN

  • direction:
    • reversible
  • common-name:
    • cobalamin-independent homocysteine transmethylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-702, L-methionine biosynthesis II:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5041, S-adenosyl-L-methionine salvage II:
    • 3 reactions found over 3 reactions in the full pathway
  • HSERMETANA-PWY, L-methionine biosynthesis III:
    • 3 reactions found over 2 reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6151, S-adenosyl-L-methionine salvage I:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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