Difference between revisions of "RXN-8675"
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(Created page with "Category:reaction == Reaction RXN-5466 == * direction: ** left-to-right * common-name: ** dolichyl-p-man:man5glcnac2-pp-dolichol α-1,3-mannosyltransferase * ec-numbe...") |
(Created page with "Category:reaction == Reaction RXN-8675 == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase * synonymous: ** sira **...") |
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| (6 intermediate revisions by 2 users not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN- | + | == Reaction RXN-8675 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase |
| − | * | + | * synonymous: |
| − | ** | + | ** sira |
| + | ** cysg | ||
| + | ** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect) | ||
| + | ** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase | ||
| + | ** uroporphyrin-iii c-methyltransferase (incorrect) | ||
| + | ** adenosylmethionine-uroporphyrinogen iii methyltransferase | ||
| + | ** uroporphyrinogen-iii methyltransferase | ||
| + | ** uroporphyrinogen methyltransferase | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[CPD- | + | * 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ12313]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| Line 16: | Line 23: | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[ | + | * [[PWY-5194]], siroheme biosynthesis: |
| − | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
| + | * [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): | ||
| + | ** '''2''' reactions found over '''13''' reactions in the full pathway | ||
| + | * [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): | ||
| + | ** '''4''' reactions found over '''15''' reactions in the full pathway | ||
| + | * [[PWY-5196]], factor 430 biosynthesis: | ||
| + | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * METANETX-RXN : MNXR110923 | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21973 21973] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238] |
| − | |||
| − | |||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=s-adenosyl-l-methionine:precorrin-1 c-methyltransferase}} |
| − | {{#set: | + | {{#set: synonymous=sira|cysg|uroporphyrinogen-iii methyltransferase|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|uroporphyrin-iii c-methyltransferase (incorrect)|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)|adenosylmethionine-uroporphyrinogen iii methyltransferase|uroporphyrinogen methyltransferase}} |
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
| − | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=pantograph | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:20, 18 March 2021
Contents
Reaction RXN-8675
- direction:
- left-to-right
- common-name:
- s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
- synonymous:
- sira
- cysg
- s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
- s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
- uroporphyrin-iii c-methyltransferase (incorrect)
- adenosylmethionine-uroporphyrinogen iii methyltransferase
- uroporphyrinogen-iii methyltransferase
- uroporphyrinogen methyltransferase
Reaction formula
- 1 CPD-9038[c] + 1 S-ADENOSYLMETHIONINE[c] => 1 ADENOSYL-HOMO-CYS[c] + 1 DIHYDROSIROHYDROCHLORIN[c]
Gene(s) associated with this reaction
- Gene: SJ12313
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5194, siroheme biosynthesis:
- 4 reactions found over 4 reactions in the full pathway
- PWY-7376, cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
- 2 reactions found over 13 reactions in the full pathway
- PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
- 4 reactions found over 15 reactions in the full pathway
- PWY-5196, factor 430 biosynthesis:
- 3 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
