Difference between revisions of "RXN-8675"

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(Created page with "Category:reaction == Reaction RXN-16025 == * direction: ** left-to-right * common-name: ** 1-acylglycerol-3-phosphate o-palmitoyltransferase ** 1-acylglycerol-3-phosphate...")
(Created page with "Category:reaction == Reaction RXN-8675 == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase * synonymous: ** sira **...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16025 ==
+
== Reaction RXN-8675 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 1-acylglycerol-3-phosphate o-palmitoyltransferase
+
** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
−
** 1-acylglycerol-3-phosphate o-acyltransferase
+
* synonymous:
−
* ec-number:
+
** sira
−
** [http://enzyme.expasy.org/EC/2.3.1.51 ec-2.3.1.51]
+
** cysg
 +
** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
 +
** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
 +
** uroporphyrin-iii c-methyltransferase (incorrect)
 +
** adenosylmethionine-uroporphyrinogen iii methyltransferase
 +
** uroporphyrinogen-iii methyltransferase
 +
** uroporphyrinogen methyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD0-2113]][c] '''+''' 1 [[Palmitoyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[CPD-17273]][c]
+
* 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ12313]]
−
* Gene: [[SJ20565]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18009]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10647]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01857]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13643]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ15136]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09888]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13501]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13801]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08831]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5194]], siroheme biosynthesis:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
 +
** '''2''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
 +
** '''4''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5196]], factor 430 biosynthesis:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR110923
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21973 21973]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=1-acylglycerol-3-phosphate o-acyltransferase|1-acylglycerol-3-phosphate o-palmitoyltransferase}}
+
{{#set: common-name=s-adenosyl-l-methionine:precorrin-1 c-methyltransferase}}
−
{{#set: ec-number=ec-2.3.1.51}}
+
{{#set: synonymous=sira|cysg|uroporphyrinogen-iii methyltransferase|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|uroporphyrin-iii c-methyltransferase (incorrect)|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)|adenosylmethionine-uroporphyrinogen iii methyltransferase|uroporphyrinogen methyltransferase}}
−
{{#set: nb gene associated=10}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-8675

  • direction:
    • left-to-right
  • common-name:
    • s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
  • synonymous:
    • sira
    • cysg
    • s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
    • s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
    • uroporphyrin-iii c-methyltransferase (incorrect)
    • adenosylmethionine-uroporphyrinogen iii methyltransferase
    • uroporphyrinogen-iii methyltransferase
    • uroporphyrinogen methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5194, siroheme biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7376, cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
    • 2 reactions found over 13 reactions in the full pathway
  • PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
    • 4 reactions found over 15 reactions in the full pathway
  • PWY-5196, factor 430 biosynthesis:
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR110923
  • RHEA:
  • LIGAND-RXN:





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