Difference between revisions of "RXN-8746"

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(Created page with "Category:reaction == Reaction 1.5.99.12-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.5.99.12 ec-1.5.99.12] == Reaction formula == * 1 [...")
(Created page with "Category:reaction == Reaction UDPKIN-RXN == * direction: ** left-to-right * common-name: ** udp kinase ** nucleoside diphosphate kinase * ec-number: ** [http://enzyme.expa...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.5.99.12-RXN ==
+
== Reaction UDPKIN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** udp kinase
 +
** nucleoside diphosphate kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.5.99.12 ec-1.5.99.12]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Acceptor]][c] '''+''' 1 [[CPD-4209]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[ADENINE]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[PRENAL]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[UTP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ20076]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20794]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08159]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16893]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10125]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21705]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21967]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07124]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21816]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7176]], UTP and CTP de novo biosynthesis:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13625 13625]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25099 25099]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05708 R05708]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00156 R00156]
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.5.99.12}}
+
{{#set: common-name=udp kinase|nucleoside diphosphate kinase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-2.7.4.6}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=9}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:05, 5 January 2021

Reaction UDPKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • udp kinase
    • nucleoside diphosphate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7176, UTP and CTP de novo biosynthesis:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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