Difference between revisions of "RXN-8789"

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(Created page with "Category:reaction == Reaction ACECOATRANS-RXN-HEXANOYL-COA/ACET//HEXANOATE/ACETYL-COA.40. == * direction: ** left-to-right == Reaction formula == * 1.0 ACET[c] '''+'''...")
(Created page with "Category:reaction == Reaction RXN-8642 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACECOATRANS-RXN-HEXANOYL-COA/ACET//HEXANOATE/ACETYL-COA.40. ==
+
== Reaction RXN-8642 ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** nadp-dependent isocitrate dehydrogenase
 +
* synonymous:
 +
** idp
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** idp1
 +
** isocitrate (nadp) dehydrogenase
 +
** nadp+-icdh
 +
** nadp isocitric dehydrogenase
 +
** idp2
 +
** nadp+-linked isocitrate dehydrogenase
 +
** nadp-linked isocitrate dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** nadp-specific isocitrate dehydrogenase
 +
** nadp-dependent isocitric dehydrogenase
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** idh (ambiguous)
 +
** isocitrate dehydrogenase (nadp-dependent)
 +
** idp3
 +
** nadp+-idh
 +
** oxalsuccinic decarboxylase
 +
</div>
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ACET]][c] '''+''' 1.0 [[HEXANOYL-COA]][c] '''=>''' 1.0 [[ACETYL-COA]][c] '''+''' 1.0 [[HEXANOATE]][c]
+
* 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ08749]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* RHEA:
−
{{#set: nb gene associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19384 19384]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=nadp-dependent isocitrate dehydrogenase}}
 +
{{#set: synonymous=nadp-linked isocitrate dehydrogenase|nadp-dependent isocitric dehydrogenase|idp2|nadp-specific isocitrate dehydrogenase|nadp+-icdh|idp|nadp+-idh|nadp isocitric dehydrogenase|idp1|isocitrate (nadp) dehydrogenase|isocitrate dehydrogenase (nadp-dependent)|idp3|nadp+-linked isocitrate dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|dual-cofactor-specific isocitrate dehydrogenase|idh (ambiguous)|oxalsuccinic decarboxylase}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:03, 5 January 2021

Reaction RXN-8642

  • direction:
    • reversible
  • common-name:
    • nadp-dependent isocitrate dehydrogenase
  • synonymous:
    • idp
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • idp1
    • isocitrate (nadp) dehydrogenase
    • nadp+-icdh
    • nadp isocitric dehydrogenase
    • idp2
    • nadp+-linked isocitrate dehydrogenase
    • nadp-linked isocitrate dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • nadp-specific isocitrate dehydrogenase
    • nadp-dependent isocitric dehydrogenase
    • dual-cofactor-specific isocitrate dehydrogenase
    • idh (ambiguous)
    • isocitrate dehydrogenase (nadp-dependent)
    • idp3
    • nadp+-idh
    • oxalsuccinic decarboxylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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