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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] == | + | == Reaction ACECOATRANS-RXN-HEXANOYL-COA/ACET//HEXANOATE/ACETYL-COA.40. == |
| | * direction: | | * direction: |
| − | ** reversible | + | ** left-to-right |
| − | * common-name:
| |
| − | ** xanthine:nad+ oxidoreductase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/1.17.1.4 ec-1.17.1.4]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[XANTHINE]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[URATE]][c] | + | * 1.0 [[ACET]][c] '''+''' 1.0 [[HEXANOYL-COA]][c] '''=>''' 1.0 [[ACETYL-COA]][c] '''+''' 1.0 [[HEXANOATE]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * Gene: [[SJ13098]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ13101]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ05673]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ05660]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ05674]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ13100]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ05668]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ13095]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
| |
| − | ** '''10''' reactions found over '''24''' reactions in the full pathway
| |
| − | * [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
| |
| − | ** '''6''' reactions found over '''17''' reactions in the full pathway
| |
| − | * [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
| |
| − | ** '''7''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
| |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
| |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-6999]], theophylline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6999 PWY-6999]
| |
| − | ** '''2''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
| |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-6538]], caffeine degradation III (bacteria, via demethylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6538 PWY-6538]
| |
| − | ** '''2''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-5695]], inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
| |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | </div>
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | + | * category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: direction=left-to-right}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16672 16672]
| + | {{#set: nb gene associated=0}} |
| − | * LIGAND-RXN:
| + | {{#set: nb pathway associated=0}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
| + | {{#set: reconstruction category=gap-filling}} |
| − | * UNIPROT:
| + | {{#set: reconstruction tool=meneco}} |
| − | ** [http://www.uniprot.org/uniprot/Q62637 Q62637]
| + | {{#set: reconstruction comment=added for gapfilling}} |
| − | ** [http://www.uniprot.org/uniprot/P22811 P22811]
| + | {{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}} |
| − | ** [http://www.uniprot.org/uniprot/Q12553 Q12553]
| |
| − | ** [http://www.uniprot.org/uniprot/P08793 P08793]
| |
| − | ** [http://www.uniprot.org/uniprot/P10351 P10351]
| |
| − | ** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
| |
| − | ** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
| |
| − | ** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
| |
| − | ** [http://www.uniprot.org/uniprot/P47990 P47990]
| |
| − | ** [http://www.uniprot.org/uniprot/P47989 P47989]
| |
| − | ** [http://www.uniprot.org/uniprot/Q00519 Q00519]
| |
| − | {{#set: direction=reversible}} | |
| − | {{#set: common-name=xanthine:nad+ oxidoreductase}}
| |
| − | {{#set: ec-number=ec-1.17.1.4}}
| |
| − | {{#set: nb gene associated=8}} | |
| − | {{#set: nb pathway associated=10}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}} | |
