Difference between revisions of "RXN-8794"

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(Created page with "Category:reaction == Reaction DALADALALIG-RXN == * direction: ** left-to-right * common-name: ** d-alanine-d-alanine ligase * ec-number: ** [http://enzyme.expasy.org/EC/6....")
(Created page with "Category:reaction == Reaction HISTCYCLOHYD-RXN == * direction: ** left-to-right * common-name: ** phosphoribosyl-amp cyclohydrolase * ec-number: ** [http://enzyme.expasy.o...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DALADALALIG-RXN ==
+
== Reaction HISTCYCLOHYD-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** d-alanine-d-alanine ligase
+
** phosphoribosyl-amp cyclohydrolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.2.4 ec-6.3.2.4]
+
** [http://enzyme.expasy.org/EC/3.5.4.19 ec-3.5.4.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 2 [[D-ALANINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[D-ALA-D-ALA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[PHOSPHORIBOSYL-AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17851]]
+
* Gene: [[SJ07444]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12670]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02214]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12870]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06726]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7953]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing):
+
* [[HISTSYN-PWY]], L-histidine biosynthesis:
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing):
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing):
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11224 11224]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20050 20050]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01150 R01150]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04037 R04037]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O83676 O83676]
+
** [http://www.uniprot.org/uniprot/P44434 P44434]
−
** [http://www.uniprot.org/uniprot/O66806 O66806]
+
** [http://www.uniprot.org/uniprot/Q9JVH6 Q9JVH6]
−
** [http://www.uniprot.org/uniprot/P46805 P46805]
+
** [http://www.uniprot.org/uniprot/Q9X0C5 Q9X0C5]
−
** [http://www.uniprot.org/uniprot/P0A1F0 P0A1F0]
+
** [http://www.uniprot.org/uniprot/Q9PM71 Q9PM71]
−
** [http://www.uniprot.org/uniprot/P0A6J8 P0A6J8]
+
** [http://www.uniprot.org/uniprot/Q02130 Q02130]
−
** [http://www.uniprot.org/uniprot/P07862 P07862]
+
** [http://www.uniprot.org/uniprot/Q9RWD6 Q9RWD6]
−
** [http://www.uniprot.org/uniprot/P96612 P96612]
+
** [http://www.uniprot.org/uniprot/Q58825 Q58825]
−
** [http://www.uniprot.org/uniprot/Q9ZDS6 Q9ZDS6]
+
** [http://www.uniprot.org/uniprot/O28329 O28329]
−
** [http://www.uniprot.org/uniprot/Q9CIL5 Q9CIL5]
+
** [http://www.uniprot.org/uniprot/O34912 O34912]
−
** [http://www.uniprot.org/uniprot/P44405 P44405]
+
** [http://www.uniprot.org/uniprot/P0A5B3 P0A5B3]
−
** [http://www.uniprot.org/uniprot/Q9PPC2 Q9PPC2]
+
** [http://www.uniprot.org/uniprot/Q9HUB7 Q9HUB7]
−
** [http://www.uniprot.org/uniprot/Q9JSZ9 Q9JSZ9]
+
** [http://www.uniprot.org/uniprot/Q9KSW7 Q9KSW7]
−
** [http://www.uniprot.org/uniprot/P35660 P35660]
+
** [http://www.uniprot.org/uniprot/Q9K0H5 Q9K0H5]
−
** [http://www.uniprot.org/uniprot/P73632 P73632]
+
** [http://www.uniprot.org/uniprot/O67780 O67780]
−
** [http://www.uniprot.org/uniprot/Q9XAK7 Q9XAK7]
+
** [http://www.uniprot.org/uniprot/Q9PBD1 Q9PBD1]
−
** [http://www.uniprot.org/uniprot/Q9RLE4 Q9RLE4]
+
** [http://www.uniprot.org/uniprot/Q50837 Q50837]
 +
** [http://www.uniprot.org/uniprot/Q53158 Q53158]
 +
** [http://www.uniprot.org/uniprot/P45353 P45353]
 +
** [http://www.uniprot.org/uniprot/Q12670 Q12670]
 +
** [http://www.uniprot.org/uniprot/P00815 P00815]
 +
** [http://www.uniprot.org/uniprot/P07685 P07685]
 +
** [http://www.uniprot.org/uniprot/O59667 O59667]
 +
** [http://www.uniprot.org/uniprot/Q9X7C3 Q9X7C3]
 +
** [http://www.uniprot.org/uniprot/O82768 O82768]
 +
** [http://www.uniprot.org/uniprot/P10367 P10367]
 +
** [http://www.uniprot.org/uniprot/P06989 P06989]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=d-alanine-d-alanine ligase}}
+
{{#set: common-name=phosphoribosyl-amp cyclohydrolase}}
−
{{#set: ec-number=ec-6.3.2.4}}
+
{{#set: ec-number=ec-3.5.4.19}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:14, 14 January 2021

Reaction HISTCYCLOHYD-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoribosyl-amp cyclohydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HISTSYN-PWY, L-histidine biosynthesis:
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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