Difference between revisions of "RXN-8794"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12507 RXN-12507] == * direction: ** left-to-right == Reaction formula == * 1 CPD0-2171[c] '...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN] == * direction: **...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** 4-hydroxyphenylpyruvate dioxygenase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.13.11.27 ec-1.13.11.27] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[HOMOGENTISATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ08954]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | + | * Gene: [[SJ08953]] | |
− | * Gene: [[ | + | ** Category: [[annotation]] |
− | ** Category: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | |||
− | *** Source: [[ | ||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7432 PWY-7432] |
− | ** '''5''' reactions found over ''' | + | ** '''3''' reactions found over '''2''' reactions in the full pathway |
+ | * [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-1581]], plastoquinol-9 biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1581 PWY-1581] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16190 16190] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02521 R02521] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P32754 P32754] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02110 Q02110] | ||
+ | ** [http://www.uniprot.org/uniprot/P32755 P32755] | ||
+ | ** [http://www.uniprot.org/uniprot/O48604 O48604] | ||
+ | ** [http://www.uniprot.org/uniprot/O23920 O23920] | ||
+ | ** [http://www.uniprot.org/uniprot/P93836 P93836] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: common-name=4-hydroxyphenylpyruvate dioxygenase}} |
− | {{#set: nb pathway associated= | + | {{#set: ec-number=ec-1.13.11.27}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: nb gene associated=2}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: nb pathway associated=4}} |
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Revision as of 09:30, 27 August 2019
Contents
Reaction 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN
- direction:
- left-to-right
- common-name:
- 4-hydroxyphenylpyruvate dioxygenase
- ec-number:
Reaction formula
- 1 OXYGEN-MOLECULE[c] + 1 P-HYDROXY-PHENYLPYRUVATE[c] => 1 CARBON-DIOXIDE[c] + 1 HOMOGENTISATE[c]
Gene(s) associated with this reaction
- Gene: SJ08954
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ08953
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7432, L-phenylalanine biosynthesis III (cytosolic, plants): PWY-7432
- 3 reactions found over 2 reactions in the full pathway
- TYRFUMCAT-PWY, L-tyrosine degradation I: TYRFUMCAT-PWY
- 2 reactions found over 5 reactions in the full pathway
- PWY-1581, plastoquinol-9 biosynthesis I: PWY-1581
- 3 reactions found over 3 reactions in the full pathway
- PWY-1422, vitamin E biosynthesis (tocopherols): PWY-1422
- 5 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links