Difference between revisions of "RXN-8988"

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(Created page with "Category:reaction == Reaction L-GLN-FRUCT-6-P-AMINOTRANS-RXN == * direction: ** reversible * common-name: ** l-glutamine:d-fructose-6-phosphate aminotransferase * ec-numbe...")
(Created page with "Category:reaction == Reaction RXN-9533 == * direction: ** left-to-right * common-name: ** fatty acid synthase ** (3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratas...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction L-GLN-FRUCT-6-P-AMINOTRANS-RXN ==
+
== Reaction RXN-9533 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** l-glutamine:d-fructose-6-phosphate aminotransferase
+
** fatty acid synthase
 +
** (3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.16 ec-2.6.1.16]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GLN]][c] '''<=>''' 1 [[D-GLUCOSAMINE-6-P]][c] '''+''' 1 [[GLT]][c]
+
* 1 [[R-3-hydroxydodecanoyl-ACPs]][c] '''=>''' 1 [[Dodec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03419]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00320]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03883]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04769]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10275]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ19629]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18633]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ15983]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18059]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[UDPNACETYLGALSYN-PWY]], UDP-N-acetyl-D-glucosamine biosynthesis II:
+
* [[PWY-7664]], oleate biosynthesis IV (anaerobic):
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''13''' reactions found over '''14''' reactions in the full pathway
−
* [[UDPNAGSYN-PWY]], UDP-N-acetyl-D-glucosamine biosynthesis I:
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-6749]], CMP-legionaminate biosynthesis I:
+
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
−
** '''1''' reactions found over '''10''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* RHEA:
+
{{#set: common-name=fatty acid synthase|(3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13237 13237]
+
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.86|ec-2.3.1.85}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=16}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00768 R00768]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q06210 Q06210]
 
−
** [http://www.uniprot.org/uniprot/Q9RXK9 Q9RXK9]
 
−
** [http://www.uniprot.org/uniprot/P39754 P39754]
 
−
** [http://www.uniprot.org/uniprot/P0A588 P0A588]
 
−
** [http://www.uniprot.org/uniprot/O84823 O84823]
 
−
** [http://www.uniprot.org/uniprot/Q9WXZ5 Q9WXZ5]
 
−
** [http://www.uniprot.org/uniprot/Q9K1P9 Q9K1P9]
 
−
** [http://www.uniprot.org/uniprot/Q9Z6U0 Q9Z6U0]
 
−
** [http://www.uniprot.org/uniprot/Q9PLA4 Q9PLA4]
 
−
** [http://www.uniprot.org/uniprot/Q58815 Q58815]
 
−
** [http://www.uniprot.org/uniprot/Q9PMT4 Q9PMT4]
 
−
** [http://www.uniprot.org/uniprot/P44708 P44708]
 
−
** [http://www.uniprot.org/uniprot/O26060 O26060]
 
−
** [http://www.uniprot.org/uniprot/O66648 O66648]
 
−
** [http://www.uniprot.org/uniprot/O83833 O83833]
 
−
** [http://www.uniprot.org/uniprot/Q9V249 Q9V249]
 
−
** [http://www.uniprot.org/uniprot/O26273 O26273]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJ94 Q9ZJ94]
 
−
** [http://www.uniprot.org/uniprot/Q9JWN9 Q9JWN9]
 
−
** [http://www.uniprot.org/uniprot/P47856 P47856]
 
−
** [http://www.uniprot.org/uniprot/P53704 P53704]
 
−
** [http://www.uniprot.org/uniprot/Q56206 Q56206]
 
−
** [http://www.uniprot.org/uniprot/P08633 P08633]
 
−
** [http://www.uniprot.org/uniprot/P25195 P25195]
 
−
** [http://www.uniprot.org/uniprot/P40831 P40831]
 
−
** [http://www.uniprot.org/uniprot/P72720 P72720]
 
−
** [http://www.uniprot.org/uniprot/Q09740 Q09740]
 
−
** [http://www.uniprot.org/uniprot/O19908 O19908]
 
−
** [http://www.uniprot.org/uniprot/Q84421 Q84421]
 
−
** [http://www.uniprot.org/uniprot/Q19130 Q19130]
 
−
** [http://www.uniprot.org/uniprot/Q19699 Q19699]
 
−
** [http://www.uniprot.org/uniprot/O86781 O86781]
 
−
** [http://www.uniprot.org/uniprot/Q9S168 Q9S168]
 
−
** [http://www.uniprot.org/uniprot/Q56275 Q56275]
 
−
** [http://www.uniprot.org/uniprot/P14742 P14742]
 
−
** [http://www.uniprot.org/uniprot/P17169 P17169]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=l-glutamine:d-fructose-6-phosphate aminotransferase}}
 
−
{{#set: ec-number=ec-2.6.1.16}}
 
−
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:05, 14 January 2021

Reaction RXN-9533

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7664, oleate biosynthesis IV (anaerobic):
    • 13 reactions found over 14 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis II (bacteria and plant cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis (animals and fungi, cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "(3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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