Difference between revisions of "RXN-8999"

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(Created page with "Category:reaction == Reaction PORPHOBILSYNTH-RXN == * direction: ** left-to-right * common-name: ** porphobilinogen synthase * ec-number: ** [http://enzyme.expasy.org/EC/4...")
(Created page with "Category:reaction == Reaction RXN-8999 == * direction: ** left-to-right * common-name: ** di-trans,poly-cis-decaprenyl diphosphate:isopentenyl-diphosphate undecaprenylcist...")
 
(5 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PORPHOBILSYNTH-RXN ==
+
== Reaction RXN-8999 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** porphobilinogen synthase
+
** di-trans,poly-cis-decaprenyl diphosphate:isopentenyl-diphosphate undecaprenylcistransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24]
+
** [http://enzyme.expasy.org/EC/2.5.1.31 ec-2.5.1.31]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
+
* 8 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 8 [[PPI]][c] '''+''' 1 [[UNDECAPRENYL-DIPHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07541]]
+
* Gene: [[SJ20712]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18388]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07531]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
+
* [[PWY-5785]], di-trans,poly-cis-undecaprenyl phosphate biosynthesis:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR110252
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27552 27552]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06447 R06447]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06214 P06214]
+
** [http://www.uniprot.org/uniprot/O82827 O82827]
−
** [http://www.uniprot.org/uniprot/P13716 P13716]
+
** [http://www.uniprot.org/uniprot/O43091 O43091]
−
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
+
** [http://www.uniprot.org/uniprot/Q9JX35 Q9JX35]
−
** [http://www.uniprot.org/uniprot/P30124 P30124]
+
** [http://www.uniprot.org/uniprot/O67291 O67291]
−
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
+
** [http://www.uniprot.org/uniprot/Q9X1B8 Q9X1B8]
−
** [http://www.uniprot.org/uniprot/P30950 P30950]
+
** [http://www.uniprot.org/uniprot/O34559 O34559]
−
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
 
−
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
 
−
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
 
−
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
 
−
** [http://www.uniprot.org/uniprot/P10518 P10518]
 
−
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
 
−
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
 
−
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
 
−
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
 
−
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
 
−
** [http://www.uniprot.org/uniprot/P05373 P05373]
 
−
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
 
−
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
 
−
** [http://www.uniprot.org/uniprot/P43210 P43210]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=porphobilinogen synthase}}
+
{{#set: common-name=di-trans,poly-cis-decaprenyl diphosphate:isopentenyl-diphosphate undecaprenylcistransferase}}
−
{{#set: ec-number=ec-4.2.1.24}}
+
{{#set: ec-number=ec-2.5.1.31}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-8999

  • direction:
    • left-to-right
  • common-name:
    • di-trans,poly-cis-decaprenyl diphosphate:isopentenyl-diphosphate undecaprenylcistransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5785, di-trans,poly-cis-undecaprenyl phosphate biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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