Difference between revisions of "RXN-8999"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ACACT4 == * direction: ** reversible * common-name: ** octanoyl-coa:acetyl-coa c-acyltransferase == Reaction formula == * 1.0 CO-A[x] '''...")
(Created page with "Category:reaction == Reaction PORPHOBILSYNTH-RXN == * direction: ** left-to-right * common-name: ** porphobilinogen synthase * ec-number: ** [http://enzyme.expasy.org/EC/4...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACACT4 ==
+
== Reaction PORPHOBILSYNTH-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** octanoyl-coa:acetyl-coa c-acyltransferase
+
** porphobilinogen synthase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CO-A]][x] '''+''' 1.0 [[CPD0-2123]][x] '''<=>''' 1.0 [[ACETYL-COA]][x] '''+''' 1.0 [[CPD-196]][x]
+
* 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21818]]
+
* Gene: [[SJ07541]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07531]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=octanoyl-coa:acetyl-coa c-acyltransferase}}
+
* RHEA:
−
{{#set: nb gene associated=1}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
−
{{#set: reconstruction tool=pantograph}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P06214 P06214]
 +
** [http://www.uniprot.org/uniprot/P13716 P13716]
 +
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
 +
** [http://www.uniprot.org/uniprot/P30124 P30124]
 +
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
 +
** [http://www.uniprot.org/uniprot/P30950 P30950]
 +
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
 +
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
 +
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
 +
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
 +
** [http://www.uniprot.org/uniprot/P10518 P10518]
 +
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
 +
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
 +
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
 +
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
 +
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
 +
** [http://www.uniprot.org/uniprot/P05373 P05373]
 +
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
 +
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
 +
** [http://www.uniprot.org/uniprot/P43210 P43210]
 +
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=porphobilinogen synthase}}
 +
{{#set: ec-number=ec-4.2.1.24}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:02, 5 January 2021

Reaction PORPHOBILSYNTH-RXN

  • direction:
    • left-to-right
  • common-name:
    • porphobilinogen synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate):
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5189, tetrapyrrole biosynthesis II (from glycine):
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-8999&oldid=62865"