Difference between revisions of "RXN-9"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11501 RXN-11501] == * direction: ** left-to-right * common-name: ** alpha-galactosidase * ec-nu...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEHYD-RXN GLUTDEHYD-RXN] == * direction: ** reversible * common-name: ** glutamate dehydrogenas...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11501 RXN-11501] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEHYD-RXN GLUTDEHYD-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** alpha-galactosidase
+
** glutamate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.22 ec-3.2.1.22]
+
** [http://enzyme.expasy.org/EC/1.4.1.4 ec-1.4.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-170]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[CPD-1099]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02145]]
+
* Gene: [[SJ10621]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02144]]
+
* Gene: [[SJ20190]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05258]]
+
* Gene: [[SJ10812]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10813]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20174]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
+
* [[GLUTSYNIII-PWY]], L-glutamate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=GLUTSYNIII-PWY GLUTSYNIII-PWY]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5675]], nitrate reduction V (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5675 PWY-5675]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11615 11615]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03634 R03634]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00248 R00248]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: common-name=alpha-galactosidase}}
+
** [http://www.uniprot.org/uniprot/P07262 P07262]
−
{{#set: ec-number=ec-3.2.1.22}}
+
** [http://www.uniprot.org/uniprot/P15111 P15111]
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/P28724 P28724]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P43793 P43793]
 +
** [http://www.uniprot.org/uniprot/Q9JT56 Q9JT56]
 +
** [http://www.uniprot.org/uniprot/P00370 P00370]
 +
** [http://www.uniprot.org/uniprot/P00369 P00369]
 +
** [http://www.uniprot.org/uniprot/P29507 P29507]
 +
** [http://www.uniprot.org/uniprot/P28998 P28998]
 +
** [http://www.uniprot.org/uniprot/P29051 P29051]
 +
** [http://www.uniprot.org/uniprot/P31026 P31026]
 +
** [http://www.uniprot.org/uniprot/P39475 P39475]
 +
** [http://www.uniprot.org/uniprot/P39708 P39708]
 +
** [http://www.uniprot.org/uniprot/P54387 P54387]
 +
** [http://www.uniprot.org/uniprot/P54386 P54386]
 +
** [http://www.uniprot.org/uniprot/P95544 P95544]
 +
** [http://www.uniprot.org/uniprot/P78804 P78804]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=glutamate dehydrogenase}}
 +
{{#set: ec-number=ec-1.4.1.4}}
 +
{{#set: nb gene associated=5}}
 +
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:26, 26 August 2019

Reaction GLUTDEHYD-RXN

  • direction:
    • reversible
  • common-name:
    • glutamate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUTSYNIII-PWY, L-glutamate biosynthesis III: GLUTSYNIII-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5675, nitrate reduction V (assimilatory): PWY-5675
    • 4 reactions found over 4 reactions in the full pathway
  • PWY490-3, nitrate reduction VI (assimilatory): PWY490-3
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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