Difference between revisions of "RXN-9003"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.77-RXN 2.1.1.77-RXN] == * direction: ** left-to-right * common-name: ** l-isoaspartate protei...")
 
(Created page with "Category:reaction == Reaction RXN-9003 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.39 ec-2.5.1.39] == Reaction formula == * 1 4-h...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.77-RXN 2.1.1.77-RXN] ==
+
== Reaction RXN-9003 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** l-isoaspartate protein carboxylmethyltransferase
 
−
** protein-l-isoaspartate (d-aspartate) o-methyltransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.77 ec-2.1.1.77]
+
** [http://enzyme.expasy.org/EC/2.5.1.39 ec-2.5.1.39]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTEIN-L-BETA-ISOASPARTATES]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTEIN-L-BETA-ISOSPARTATE-METHYL-ESTERS]][c]
+
* 1 [[4-hydroxybenzoate]][c] '''+''' 1 [[ALL-TRANS-HEXAPRENYL-DIPHOSPHATE]][c] '''=>''' 1 [[3-HEXAPRENYL-4-HYDROXYBENZOATE]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06126]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[annotation]]
+
* Gene: [[SJ10418]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ01013]]
+
* Gene: [[SJ04442]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03479]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19255]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10781]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7235]], superpathway of ubiquinol-6 biosynthesis (late decarboxylation):
 +
** '''3''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY3O-19]], ubiquinol-6 biosynthesis (late decarboxylation):
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR100569
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12706 12706]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44557 44557]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04190 R04190]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05616 R05616]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P22062 P22062]
 
−
** [http://www.uniprot.org/uniprot/P22061 P22061]
 
−
** [http://www.uniprot.org/uniprot/P15246 P15246]
 
−
** [http://www.uniprot.org/uniprot/Q9JW29 Q9JW29]
 
−
** [http://www.uniprot.org/uniprot/Q9PIR6 Q9PIR6]
 
−
** [http://www.uniprot.org/uniprot/P23506 P23506]
 
−
** [http://www.uniprot.org/uniprot/P0A7A5 P0A7A5]
 
−
** [http://www.uniprot.org/uniprot/Q43209 Q43209]
 
−
** [http://www.uniprot.org/uniprot/Q42539 Q42539]
 
−
** [http://www.uniprot.org/uniprot/Q27873 Q27873]
 
−
** [http://www.uniprot.org/uniprot/Q9URZ1 Q9URZ1]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=protein-l-isoaspartate (d-aspartate) o-methyltransferase|l-isoaspartate protein carboxylmethyltransferase}}
+
{{#set: ec-number=ec-2.5.1.39}}
−
{{#set: ec-number=ec-2.1.1.77}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:22, 18 March 2021

Reaction RXN-9003

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7235, superpathway of ubiquinol-6 biosynthesis (late decarboxylation):
    • 3 reactions found over n.a reactions in the full pathway
  • PWY3O-19, ubiquinol-6 biosynthesis (late decarboxylation):
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100569
  • RHEA:
  • LIGAND-RXN:





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