Difference between revisions of "RXN-9227"

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(Created page with "Category:reaction == Reaction RXN0-2382 == * direction: ** left-to-right * common-name: ** tryptophan synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4....")
(Created page with "Category:reaction == Reaction RXN-15838 == * direction: ** reversible * common-name: ** nitrite reductase (no-forming) * ec-number: ** [http://enzyme.expasy.org/EC/1.7.2.1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-2382 ==
+
== Reaction RXN-15838 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** tryptophan synthase
+
** nitrite reductase (no-forming)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122]
+
** [http://enzyme.expasy.org/EC/1.7.2.1 ec-1.7.2.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[NITRITE]][e] '''+''' 2 [[PROTON]][e] '''+''' 1 [[Reduced-cytochromes-c551]][e] '''<=>''' 1 [[NITRIC-OXIDE]][e] '''+''' 1 [[Oxidized-cytochromes-c551]][e] '''+''' 1 [[WATER]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09991]]
+
* Gene: [[SJ15937]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16706]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20325]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15468]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10955]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
+
* [[DENITRIFICATION-PWY]], nitrate reduction I (denitrification):
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435]
+
{{#set: common-name=nitrite reductase (no-forming)}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-1.7.2.1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
+
{{#set: nb gene associated=1}}
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=tryptophan synthase}}
 
−
{{#set: ec-number=ec-4.2.1.122}}
 
−
{{#set: nb gene associated=5}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:27, 15 January 2021

Reaction RXN-15838

  • direction:
    • reversible
  • common-name:
    • nitrite reductase (no-forming)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • DENITRIFICATION-PWY, nitrate reduction I (denitrification):
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-9227&oldid=117005"