Difference between revisions of "RXN-9235"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] == * direction: ** reversible * common-name: ** 5,10-methylenete...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.179 ec-3.2.1.179]
+
** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-13187]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13122]][c] '''+''' 1 [[CPD-13188]][c]
+
* 1 [[SER]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13212]]
+
* Gene: [[SJ03668]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15530]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6827]], gellan degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6827 PWY-6827]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[GLYSYN-PWY]], glycine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-PWY GLYSYN-PWY]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-3661-1]], glycine betaine degradation II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15484 15484]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R09831 R09831]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31638 31638]
+
** [http://www.uniprot.org/uniprot/P35623 P35623]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P34898 P34898]
−
{{#set: ec-number=ec-3.2.1.179}}
+
** [http://www.uniprot.org/uniprot/P34899 P34899]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/P34896 P34896]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P34897 P34897]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
 +
** [http://www.uniprot.org/uniprot/O23254 O23254]
 +
** [http://www.uniprot.org/uniprot/O53441 O53441]
 +
** [http://www.uniprot.org/uniprot/O08370 O08370]
 +
** [http://www.uniprot.org/uniprot/P43844 P43844]
 +
** [http://www.uniprot.org/uniprot/Q58992 Q58992]
 +
** [http://www.uniprot.org/uniprot/O66776 O66776]
 +
** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
 +
** [http://www.uniprot.org/uniprot/P47634 P47634]
 +
** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
 +
** [http://www.uniprot.org/uniprot/P56089 P56089]
 +
** [http://www.uniprot.org/uniprot/O53615 O53615]
 +
** [http://www.uniprot.org/uniprot/O83349 O83349]
 +
** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
 +
** [http://www.uniprot.org/uniprot/O51547 O51547]
 +
** [http://www.uniprot.org/uniprot/O84439 O84439]
 +
** [http://www.uniprot.org/uniprot/P24531 P24531]
 +
** [http://www.uniprot.org/uniprot/P39148 P39148]
 +
** [http://www.uniprot.org/uniprot/P24060 P24060]
 +
** [http://www.uniprot.org/uniprot/P37292 P37292]
 +
** [http://www.uniprot.org/uniprot/P34895 P34895]
 +
** [http://www.uniprot.org/uniprot/P34894 P34894]
 +
** [http://www.uniprot.org/uniprot/P49357 P49357]
 +
** [http://www.uniprot.org/uniprot/P49358 P49358]
 +
** [http://www.uniprot.org/uniprot/P50433 P50433]
 +
** [http://www.uniprot.org/uniprot/P37291 P37291]
 +
** [http://www.uniprot.org/uniprot/P78011 P78011]
 +
** [http://www.uniprot.org/uniprot/P77962 P77962]
 +
** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
 +
** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
 +
** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
 +
** [http://www.uniprot.org/uniprot/O23984 O23984]
 +
** [http://www.uniprot.org/uniprot/P0A825 P0A825]
 +
** [http://www.uniprot.org/uniprot/P07511 P07511]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase}}
 +
{{#set: ec-number=ec-2.1.2.1}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=10}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:26, 26 August 2019

Reaction GLYOHMETRANS-RXN

  • direction:
    • reversible
  • common-name:
    • 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 10 reactions found over 24 reactions in the full pathway
  • PWY-181, photorespiration: PWY-181
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-3661, glycine betaine degradation I: PWY-3661
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-2201, folate transformations I: PWY-2201
    • 9 reactions found over 12 reactions in the full pathway
  • GLYSYN-PWY, glycine biosynthesis I: GLYSYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-3661-1, glycine betaine degradation II (mammalian): PWY-3661-1
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway): PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • PWY-3841, folate transformations II: PWY-3841
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-2161, folate polyglutamylation: PWY-2161
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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