Difference between revisions of "RXN-9235"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] == * direction: ** reversible * common-name: ** 5,10-methylenete...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
+ | * common-name: | ||
+ | ** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[SER]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ03668]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ15530]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''1''' reactions found over '''2''' reactions in the full pathway | + | * [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] |
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] | ||
+ | ** '''10''' reactions found over '''24''' reactions in the full pathway | ||
+ | * [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661] | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[GLYSYN-PWY]], glycine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-PWY GLYSYN-PWY] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-3661-1]], glycine betaine degradation II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] | ||
+ | ** '''6''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15484 15484] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945] |
− | * | + | * UNIPROT: |
− | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/P35623 P35623] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/P34898 P34898] |
− | {{#set: ec-number=ec- | + | ** [http://www.uniprot.org/uniprot/P34899 P34899] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P34896 P34896] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7] |
− | {{#set: reconstruction category=orthology}} | + | ** [http://www.uniprot.org/uniprot/P34897 P34897] |
− | {{#set: reconstruction tool=pantograph}} | + | ** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1] |
+ | ** [http://www.uniprot.org/uniprot/O23254 O23254] | ||
+ | ** [http://www.uniprot.org/uniprot/O53441 O53441] | ||
+ | ** [http://www.uniprot.org/uniprot/O08370 O08370] | ||
+ | ** [http://www.uniprot.org/uniprot/P43844 P43844] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58992 Q58992] | ||
+ | ** [http://www.uniprot.org/uniprot/O66776 O66776] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7] | ||
+ | ** [http://www.uniprot.org/uniprot/P47634 P47634] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9] | ||
+ | ** [http://www.uniprot.org/uniprot/P56089 P56089] | ||
+ | ** [http://www.uniprot.org/uniprot/O53615 O53615] | ||
+ | ** [http://www.uniprot.org/uniprot/O83349 O83349] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7] | ||
+ | ** [http://www.uniprot.org/uniprot/O51547 O51547] | ||
+ | ** [http://www.uniprot.org/uniprot/O84439 O84439] | ||
+ | ** [http://www.uniprot.org/uniprot/P24531 P24531] | ||
+ | ** [http://www.uniprot.org/uniprot/P39148 P39148] | ||
+ | ** [http://www.uniprot.org/uniprot/P24060 P24060] | ||
+ | ** [http://www.uniprot.org/uniprot/P37292 P37292] | ||
+ | ** [http://www.uniprot.org/uniprot/P34895 P34895] | ||
+ | ** [http://www.uniprot.org/uniprot/P34894 P34894] | ||
+ | ** [http://www.uniprot.org/uniprot/P49357 P49357] | ||
+ | ** [http://www.uniprot.org/uniprot/P49358 P49358] | ||
+ | ** [http://www.uniprot.org/uniprot/P50433 P50433] | ||
+ | ** [http://www.uniprot.org/uniprot/P37291 P37291] | ||
+ | ** [http://www.uniprot.org/uniprot/P78011 P78011] | ||
+ | ** [http://www.uniprot.org/uniprot/P77962 P77962] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5] | ||
+ | ** [http://www.uniprot.org/uniprot/O23984 O23984] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A825 P0A825] | ||
+ | ** [http://www.uniprot.org/uniprot/P07511 P07511] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase}} | ||
+ | {{#set: ec-number=ec-2.1.2.1}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=10}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 14:26, 26 August 2019
Contents
Reaction GLYOHMETRANS-RXN
- direction:
- reversible
- common-name:
- 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
- ec-number:
Reaction formula
- 1 SER[c] + 1 THF-GLU-N[c] <=> 1 GLY[c] + 1 METHYLENE-THF-GLU-N[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ03668
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ15530
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
- 8 reactions found over 9 reactions in the full pathway
- PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
- 10 reactions found over 24 reactions in the full pathway
- PWY-181, photorespiration: PWY-181
- 5 reactions found over 9 reactions in the full pathway
- PWY-3661, glycine betaine degradation I: PWY-3661
- 3 reactions found over 7 reactions in the full pathway
- PWY-2201, folate transformations I: PWY-2201
- 9 reactions found over 12 reactions in the full pathway
- GLYSYN-PWY, glycine biosynthesis I: GLYSYN-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-3661-1, glycine betaine degradation II (mammalian): PWY-3661-1
- 2 reactions found over 4 reactions in the full pathway
- PWY-1622, formaldehyde assimilation I (serine pathway): PWY-1622
- 6 reactions found over 13 reactions in the full pathway
- PWY-3841, folate transformations II: PWY-3841
- 9 reactions found over 11 reactions in the full pathway
- PWY-2161, folate polyglutamylation: PWY-2161
- 5 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: