Difference between revisions of "RXN-9526"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** left-to-right * common-name: ** protoporp...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] == * direction: ** left-to-right * ec-number: ** [http://enzyme....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** protoporphyrinogen oxidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.4 ec-1.3.3.4]
+
** [http://enzyme.expasy.org/EC/4.1.1.15 ec-4.1.1.15]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[4-AMINO-BUTYRATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21798]]
+
* Gene: [[SJ12405]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
* [[PWY0-1305]], L-glutamate degradation IX (via 4-aminobutanoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1305 PWY0-1305]
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
−
** '''5''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25577 25577]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17786 17786]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00261 R00261]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P50336 P50336]
+
** [http://www.uniprot.org/uniprot/P20228 P20228]
−
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
+
** [http://www.uniprot.org/uniprot/Q05329 Q05329]
−
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
+
** [http://www.uniprot.org/uniprot/P18088 P18088]
−
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
+
** [http://www.uniprot.org/uniprot/P14748 P14748]
−
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
+
** [http://www.uniprot.org/uniprot/Q07346 Q07346]
−
** [http://www.uniprot.org/uniprot/P51175 P51175]
+
** [http://www.uniprot.org/uniprot/Q99259 Q99259]
−
** [http://www.uniprot.org/uniprot/O24163 O24163]
+
** [http://www.uniprot.org/uniprot/P69910 P69910]
−
** [http://www.uniprot.org/uniprot/O24164 O24164]
+
** [http://www.uniprot.org/uniprot/Q9CG20 Q9CG20]
−
** [http://www.uniprot.org/uniprot/O64384 O64384]
+
** [http://www.uniprot.org/uniprot/P48321 P48321]
−
** [http://www.uniprot.org/uniprot/O64385 O64385]
+
** [http://www.uniprot.org/uniprot/P48319 P48319]
 +
** [http://www.uniprot.org/uniprot/Q05683 Q05683]
 +
** [http://www.uniprot.org/uniprot/Q24062 Q24062]
 +
** [http://www.uniprot.org/uniprot/P69908 P69908]
 +
** [http://www.uniprot.org/uniprot/P48320 P48320]
 +
** [http://www.uniprot.org/uniprot/Q59956 Q59956]
 +
** [http://www.uniprot.org/uniprot/P48318 P48318]
 +
** [http://www.uniprot.org/uniprot/Q49854 Q49854]
 +
** [http://www.uniprot.org/uniprot/Q49855 Q49855]
 +
** [http://www.uniprot.org/uniprot/Q49863 Q49863]
 +
** [http://www.uniprot.org/uniprot/O81101 O81101]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=protoporphyrinogen oxidase}}
+
{{#set: ec-number=ec-4.1.1.15}}
−
{{#set: ec-number=ec-1.3.3.4}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 14:29, 26 August 2019

Reaction GLUTDECARBOX-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1305, L-glutamate degradation IX (via 4-aminobutanoate): PWY0-1305
    • 1 reactions found over 1 reactions in the full pathway
  • GLUDEG-I-PWY, GABA shunt: GLUDEG-I-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-4321, L-glutamate degradation IV: PWY-4321
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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