Difference between revisions of "RXN-9527"

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(Created page with "Category:reaction == Reaction MALONYL-COA-ACP-TRANSACYL-RXN == * direction: ** left-to-right * common-name: ** fatty acid synthase ** malonyl-coa-acp transacylase * ec-num...")
(Created page with "Category:reaction == Reaction RXN-9527 == * direction: ** left-to-right * common-name: ** 3-oxo-decanoyl-[acyl-carrier protein] synthase ** 3-oxoacyl-[acyl-carrier-protein...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MALONYL-COA-ACP-TRANSACYL-RXN ==
+
== Reaction RXN-9527 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fatty acid synthase
+
** 3-oxo-decanoyl-[acyl-carrier protein] synthase
−
** malonyl-coa-acp transacylase
+
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
−
** [http://enzyme.expasy.org/EC/2.3.1.39 ec-2.3.1.39]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACP]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MALONYL-ACP]][c]
+
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ17743]]
+
* Gene: [[SJ06617]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03883]]
+
* Gene: [[SJ18059]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ13014]]
+
* Gene: [[SJ15984]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06944]]
+
* Gene: [[SJ00005]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11672]]
+
* Gene: [[SJ10624]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
Line 44: Line 31:
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19629]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10624]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
* Gene: [[SJ04443]]
 
* Gene: [[SJ04443]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
+
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-4381]], fatty acid biosynthesis initiation (bacteria and plants):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6799]], fatty acid biosynthesis initiation (plant mitochondria):
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04960 R04960]
−
* UNIPROT:
+
* METANETX-RXN : MNXR109251
−
** [http://www.uniprot.org/uniprot/P72391 P72391]
 
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
 
−
** [http://www.uniprot.org/uniprot/O34825 O34825]
 
−
** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
 
−
** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
 
−
** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
 
−
** [http://www.uniprot.org/uniprot/O24916 O24916]
 
−
** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
 
−
** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
 
−
** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
 
−
** [http://www.uniprot.org/uniprot/P43712 P43712]
 
−
** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
 
−
** [http://www.uniprot.org/uniprot/O67041 O67041]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
 
−
** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
 
−
** [http://www.uniprot.org/uniprot/P63458 P63458]
 
−
** [http://www.uniprot.org/uniprot/O84241 O84241]
 
−
** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
 
−
** [http://www.uniprot.org/uniprot/P71019 P71019]
 
−
** [http://www.uniprot.org/uniprot/P07149 P07149]
 
−
** [http://www.uniprot.org/uniprot/P73242 P73242]
 
−
** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
 
−
** [http://www.uniprot.org/uniprot/Q54205 Q54205]
 
−
** [http://www.uniprot.org/uniprot/O54437 O54437]
 
−
** [http://www.uniprot.org/uniprot/Q56692 Q56692]
 
−
** [http://www.uniprot.org/uniprot/O13698 O13698]
 
−
** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
 
−
** [http://www.uniprot.org/uniprot/O69476 O69476]
 
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fatty acid synthase|malonyl-coa-acp transacylase}}
+
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase|3-oxo-decanoyl-[acyl-carrier protein] synthase}}
−
{{#set: ec-number=ec-2.3.1.39|ec-2.3.1.86|ec-2.3.1.85}}
+
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
−
{{#set: nb gene associated=15}}
+
{{#set: nb gene associated=7}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-9527

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-decanoyl-[acyl-carrier protein] synthase
    • 3-oxoacyl-[acyl-carrier-protein] synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis (type II fatty acid synthase):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR109251
  • Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxo-decanoyl-[acyl-carrier protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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