Difference between revisions of "RXN-9535"

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(Created page with "Category:reaction == Reaction RIBOFLAVIN-SYN-RXN == * direction: ** left-to-right * common-name: ** riboflavin synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1....")
(Created page with "Category:reaction == Reaction RXN-15829 == * direction: ** left-to-right * common-name: ** ubiquinol-cytochrome-c reductase ** ubiquinol--cytochrome-c reductase * ec-numbe...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RIBOFLAVIN-SYN-RXN ==
+
== Reaction RXN-15829 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** riboflavin synthase
+
** ubiquinol-cytochrome-c reductase
 +
** ubiquinol--cytochrome-c reductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.9 ec-2.5.1.9]
+
** [http://enzyme.expasy.org/EC/1.10.2.2 ec-1.10.2.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
+
* 4 [[PROTON]][c] '''+''' 2 [[Reduced-CycA1-cytochromes]][e] '''+''' 1 [[Ubiquinones]][c] '''=>''' 2 [[Oxidized-CycA1-cytochromes]][e] '''+''' 2 [[PROTON]][e] '''+''' 1 [[Ubiquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11166]]
+
* Gene: [[SJ16637]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13715]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03106]]
 +
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
+
* [[PWY-6692]], Fe(II) oxidation:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6167]], flavin biosynthesis II (archaea):
 
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6168]], flavin biosynthesis III (fungi):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20773 20773]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P11998 P11998]
 
−
** [http://www.uniprot.org/uniprot/P16440 P16440]
 
−
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
 
−
** [http://www.uniprot.org/uniprot/O24854 O24854]
 
−
** [http://www.uniprot.org/uniprot/O26237 O26237]
 
−
** [http://www.uniprot.org/uniprot/P66037 P66037]
 
−
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
 
−
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
 
−
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
 
−
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
 
−
** [http://www.uniprot.org/uniprot/P45273 P45273]
 
−
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
 
−
** [http://www.uniprot.org/uniprot/O66529 O66529]
 
−
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
 
−
** [http://www.uniprot.org/uniprot/O28856 O28856]
 
−
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
 
−
** [http://www.uniprot.org/uniprot/P61714 P61714]
 
−
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
 
−
** [http://www.uniprot.org/uniprot/P38145 P38145]
 
−
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
 
−
** [http://www.uniprot.org/uniprot/P73527 P73527]
 
−
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
 
−
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
 
−
** [http://www.uniprot.org/uniprot/P50854 P50854]
 
−
** [http://www.uniprot.org/uniprot/P50856 P50856]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=riboflavin synthase}}
+
{{#set: common-name=ubiquinol--cytochrome-c reductase|ubiquinol-cytochrome-c reductase}}
−
{{#set: ec-number=ec-2.5.1.9}}
+
{{#set: ec-number=ec-1.10.2.2}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:35, 5 January 2021

Reaction RXN-15829

  • direction:
    • left-to-right
  • common-name:
    • ubiquinol-cytochrome-c reductase
    • ubiquinol--cytochrome-c reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6692, Fe(II) oxidation:
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-9535&oldid=76726"