Difference between revisions of "RXN-9549"

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(Created page with "Category:reaction == Reaction ACACT4h == * direction: ** left-to-right * common-name: ** octanoyl-coa:acetyl-coa c-acyltransferase == Reaction formula == * 1.0 ACETYL-CO...")
(Created page with "Category:reaction == Reaction PEPDEPHOS-RXN == * direction: ** left-to-right * common-name: ** pyruvate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.40 ec-2.7...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACACT4h ==
+
== Reaction PEPDEPHOS-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** octanoyl-coa:acetyl-coa c-acyltransferase
+
** pyruvate kinase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.7.1.40 ec-2.7.1.40]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ACETYL-COA]][h] '''+''' 1.0 [[CPD-196]][h] '''=>''' 1.0 [[CO-A]][h] '''+''' 1.0 [[CPD0-2123]][h]
+
* 1 [[ADP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21818]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17585]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18193]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14898]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18192]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13451]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt:
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-1042]], glycolysis IV (plant cytosol):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol:
 +
** '''8''' reactions found over '''6''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 +
** '''7''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative):
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18157 18157]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00200 R00200]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q7M034 Q7M034]
 +
** [http://www.uniprot.org/uniprot/P11979 P11979]
 +
** [http://www.uniprot.org/uniprot/P11980 P11980]
 +
** [http://www.uniprot.org/uniprot/Q07637 Q07637]
 +
** [http://www.uniprot.org/uniprot/P34038 P34038]
 +
** [http://www.uniprot.org/uniprot/P43924 P43924]
 +
** [http://www.uniprot.org/uniprot/Q57572 Q57572]
 +
** [http://www.uniprot.org/uniprot/P0AD61 P0AD61]
 +
** [http://www.uniprot.org/uniprot/P19680 P19680]
 +
** [http://www.uniprot.org/uniprot/Q9PIB0 Q9PIB0]
 +
** [http://www.uniprot.org/uniprot/P80885 P80885]
 +
** [http://www.uniprot.org/uniprot/Q9UYU6 Q9UYU6]
 +
** [http://www.uniprot.org/uniprot/Q9JWX8 Q9JWX8]
 +
** [http://www.uniprot.org/uniprot/P47458 P47458]
 +
** [http://www.uniprot.org/uniprot/Q46078 Q46078]
 +
** [http://www.uniprot.org/uniprot/P30614 P30614]
 +
** [http://www.uniprot.org/uniprot/P22200 P22200]
 +
** [http://www.uniprot.org/uniprot/Q27788 Q27788]
 +
** [http://www.uniprot.org/uniprot/P51182 P51182]
 +
** [http://www.uniprot.org/uniprot/P51181 P51181]
 +
** [http://www.uniprot.org/uniprot/P31865 P31865]
 +
** [http://www.uniprot.org/uniprot/P00549 P00549]
 +
** [http://www.uniprot.org/uniprot/P00548 P00548]
 +
** [http://www.uniprot.org/uniprot/P30613 P30613]
 +
** [http://www.uniprot.org/uniprot/O75758 O75758]
 +
** [http://www.uniprot.org/uniprot/P12928 P12928]
 +
** [http://www.uniprot.org/uniprot/O30853 O30853]
 +
** [http://www.uniprot.org/uniprot/P30615 P30615]
 +
** [http://www.uniprot.org/uniprot/P30616 P30616]
 +
** [http://www.uniprot.org/uniprot/Q02499 Q02499]
 +
** [http://www.uniprot.org/uniprot/P22360 P22360]
 +
** [http://www.uniprot.org/uniprot/P21599 P21599]
 +
** [http://www.uniprot.org/uniprot/P14618 P14618]
 +
** [http://www.uniprot.org/uniprot/Q42954 Q42954]
 +
** [http://www.uniprot.org/uniprot/Q40545 Q40545]
 +
** [http://www.uniprot.org/uniprot/P52480 P52480]
 +
** [http://www.uniprot.org/uniprot/P52489 P52489]
 +
** [http://www.uniprot.org/uniprot/P78031 P78031]
 +
** [http://www.uniprot.org/uniprot/Q55863 Q55863]
 +
** [http://www.uniprot.org/uniprot/P73534 P73534]
 +
** [http://www.uniprot.org/uniprot/O65595 O65595]
 +
** [http://www.uniprot.org/uniprot/Q42806 Q42806]
 +
** [http://www.uniprot.org/uniprot/Q43117 Q43117]
 +
** [http://www.uniprot.org/uniprot/Q10208 Q10208]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=octanoyl-coa:acetyl-coa c-acyltransferase}}
+
{{#set: common-name=pyruvate kinase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-2.7.1.40}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=4}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=17}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:21, 15 January 2021

Reaction PEPDEPHOS-RXN

  • direction:
    • left-to-right
  • common-name:
    • pyruvate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • PWY-1042, glycolysis IV (plant cytosol):
    • 9 reactions found over 10 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus):
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol:
    • 8 reactions found over 6 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered):
    • 8 reactions found over 5 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
    • 7 reactions found over 4 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7383, anaerobic energy metabolism (invertebrates, cytosol):
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 10 reactions found over 13 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative):
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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