Difference between revisions of "RXN-9549"

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(Created page with "Category:reaction == Reaction PEPDEPHOS-RXN == * direction: ** left-to-right * common-name: ** pyruvate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.40 ec-2.7...")
(Created page with "Category:reaction == Reaction RXN-9549 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.1.2.14 ec-3.1.2.14] == Reaction formula == * 1 Pal...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PEPDEPHOS-RXN ==
+
== Reaction RXN-9549 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** pyruvate kinase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.40 ec-2.7.1.40]
+
** [http://enzyme.expasy.org/EC/3.1.2.14 ec-3.1.2.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[Palmitoyl-ACPs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[PALMITATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[SJ17585]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18193]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18192]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13451]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
−
* [[P122-PWY]], heterolactic fermentation:
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
** '''16''' reactions found over '''18''' reactions in the full pathway
+
* [[PWY-7746]], mycobacterial sulfolipid biosynthesis:
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
−
* [[P124-PWY]], Bifidobacterium shunt:
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
** '''12''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV (plant cytosol):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P341-PWY]], glycolysis V (Pyrococcus):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7003]], glycerol degradation to butanol:
 
−
** '''8''' reactions found over '''6''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 
−
** '''7''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol):
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR107135
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01706 R01706]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18157 18157]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30130 30130]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00200 R00200]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q7M034 Q7M034]
 
−
** [http://www.uniprot.org/uniprot/P11979 P11979]
 
−
** [http://www.uniprot.org/uniprot/P11980 P11980]
 
−
** [http://www.uniprot.org/uniprot/Q07637 Q07637]
 
−
** [http://www.uniprot.org/uniprot/P34038 P34038]
 
−
** [http://www.uniprot.org/uniprot/P43924 P43924]
 
−
** [http://www.uniprot.org/uniprot/Q57572 Q57572]
 
−
** [http://www.uniprot.org/uniprot/P0AD61 P0AD61]
 
−
** [http://www.uniprot.org/uniprot/P19680 P19680]
 
−
** [http://www.uniprot.org/uniprot/Q9PIB0 Q9PIB0]
 
−
** [http://www.uniprot.org/uniprot/P80885 P80885]
 
−
** [http://www.uniprot.org/uniprot/Q9UYU6 Q9UYU6]
 
−
** [http://www.uniprot.org/uniprot/Q9JWX8 Q9JWX8]
 
−
** [http://www.uniprot.org/uniprot/P47458 P47458]
 
−
** [http://www.uniprot.org/uniprot/Q46078 Q46078]
 
−
** [http://www.uniprot.org/uniprot/P30614 P30614]
 
−
** [http://www.uniprot.org/uniprot/P22200 P22200]
 
−
** [http://www.uniprot.org/uniprot/Q27788 Q27788]
 
−
** [http://www.uniprot.org/uniprot/P51182 P51182]
 
−
** [http://www.uniprot.org/uniprot/P51181 P51181]
 
−
** [http://www.uniprot.org/uniprot/P31865 P31865]
 
−
** [http://www.uniprot.org/uniprot/P00549 P00549]
 
−
** [http://www.uniprot.org/uniprot/P00548 P00548]
 
−
** [http://www.uniprot.org/uniprot/P30613 P30613]
 
−
** [http://www.uniprot.org/uniprot/O75758 O75758]
 
−
** [http://www.uniprot.org/uniprot/P12928 P12928]
 
−
** [http://www.uniprot.org/uniprot/O30853 O30853]
 
−
** [http://www.uniprot.org/uniprot/P30615 P30615]
 
−
** [http://www.uniprot.org/uniprot/P30616 P30616]
 
−
** [http://www.uniprot.org/uniprot/Q02499 Q02499]
 
−
** [http://www.uniprot.org/uniprot/P22360 P22360]
 
−
** [http://www.uniprot.org/uniprot/P21599 P21599]
 
−
** [http://www.uniprot.org/uniprot/P14618 P14618]
 
−
** [http://www.uniprot.org/uniprot/Q42954 Q42954]
 
−
** [http://www.uniprot.org/uniprot/Q40545 Q40545]
 
−
** [http://www.uniprot.org/uniprot/P52480 P52480]
 
−
** [http://www.uniprot.org/uniprot/P52489 P52489]
 
−
** [http://www.uniprot.org/uniprot/P78031 P78031]
 
−
** [http://www.uniprot.org/uniprot/Q55863 Q55863]
 
−
** [http://www.uniprot.org/uniprot/P73534 P73534]
 
−
** [http://www.uniprot.org/uniprot/O65595 O65595]
 
−
** [http://www.uniprot.org/uniprot/Q42806 Q42806]
 
−
** [http://www.uniprot.org/uniprot/Q43117 Q43117]
 
−
** [http://www.uniprot.org/uniprot/Q10208 Q10208]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pyruvate kinase}}
+
{{#set: ec-number=ec-3.1.2.14}}
−
{{#set: ec-number=ec-2.7.1.40}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb pathway associated=17}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:18, 18 March 2021

Reaction RXN-9549

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5994, palmitate biosynthesis (type I fatty acid synthase):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-7746, mycobacterial sulfolipid biosynthesis:
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis (type II fatty acid synthase):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR107135
  • LIGAND-RXN:
  • RHEA:





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