Difference between revisions of "RXN-9556"

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(Created page with "Category:reaction == Reaction IMPCYCLOHYDROLASE-RXN == * direction: ** reversible * common-name: ** imp cyclohydrolase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.1...")
(Created page with "Category:reaction == Reaction ALANINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** alanine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction IMPCYCLOHYDROLASE-RXN ==
+
== Reaction ALANINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** imp cyclohydrolase
+
** alanine-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.10 ec-3.5.4.10]
+
** [http://enzyme.expasy.org/EC/6.1.1.7 ec-6.1.1.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[IMP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE]][c]
+
* 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21660]]
+
* Gene: [[SJ05317]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09204]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02907]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II:
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY-7234]], inosine-5'-phosphate biosynthesis III:
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I:
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115678
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18448 18448]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12541 12541]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01127 R01127]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P43852 P43852]
+
** [http://www.uniprot.org/uniprot/P56452 P56452]
−
** [http://www.uniprot.org/uniprot/P12048 P12048]
+
** [http://www.uniprot.org/uniprot/O27718 O27718]
−
** [http://www.uniprot.org/uniprot/P31335 P31335]
+
** [http://www.uniprot.org/uniprot/O34526 O34526]
−
** [http://www.uniprot.org/uniprot/P26978 P26978]
+
** [http://www.uniprot.org/uniprot/P47534 P47534]
−
** [http://www.uniprot.org/uniprot/P15639 P15639]
+
** [http://www.uniprot.org/uniprot/O58035 O58035]
−
** [http://www.uniprot.org/uniprot/Q9PNY2 Q9PNY2]
+
** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
−
** [http://www.uniprot.org/uniprot/Q9JUQ8 Q9JUQ8]
+
** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
−
** [http://www.uniprot.org/uniprot/P31939 P31939]
+
** [http://www.uniprot.org/uniprot/Q57984 Q57984]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/O51238 O51238]
−
{{#set: common-name=imp cyclohydrolase}}
+
** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
−
{{#set: ec-number=ec-3.5.4.10}}
+
** [http://www.uniprot.org/uniprot/O83980 O83980]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
−
{{#set: nb pathway associated=3}}
+
** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/O67323 O67323]
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
 +
** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
 +
** [http://www.uniprot.org/uniprot/P49588 P49588]
 +
** [http://www.uniprot.org/uniprot/P43815 P43815]
 +
** [http://www.uniprot.org/uniprot/P50475 P50475]
 +
** [http://www.uniprot.org/uniprot/P24075 P24075]
 +
** [http://www.uniprot.org/uniprot/P27866 P27866]
 +
** [http://www.uniprot.org/uniprot/P35029 P35029]
 +
** [http://www.uniprot.org/uniprot/P40825 P40825]
 +
** [http://www.uniprot.org/uniprot/P75368 P75368]
 +
** [http://www.uniprot.org/uniprot/Q48976 Q48976]
 +
** [http://www.uniprot.org/uniprot/P00957 P00957]
 +
** [http://www.uniprot.org/uniprot/P21894 P21894]
 +
** [http://www.uniprot.org/uniprot/O50189 O50189]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=alanine-trna ligase}}
 +
{{#set: ec-number=ec-6.1.1.7}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction ALANINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • alanine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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