Difference between revisions of "RXN-9601"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYCLOARTENOL-SYNTHASE-RXN CYCLOARTENOL-SYNTHASE-RXN] == * direction: ** left-to-right * common-name...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7968 RXN-7968] == * direction: ** left-to-right * common-name: ** shikimate 3-dehydrogenase (na...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYCLOARTENOL-SYNTHASE-RXN CYCLOARTENOL-SYNTHASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7968 RXN-7968] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** cycloartenol synthase
+
** shikimate 3-dehydrogenase (nadp+)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.4.99.8 ec-5.4.99.8]
+
** [http://enzyme.expasy.org/EC/1.1.1.282 ec-1.1.1.282]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[EPOXYSQUALENE]][c] '''=>''' 1 [[CYCLOARTENOL]][c]
+
* 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[SHIKIMATE]][c] '''=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09945]]
+
* Gene: [[SJ10493]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6115]]: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6115 PWY-6115]
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
−
** '''1''' reactions found over '''n.a''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7154]], ergosterol biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7154 PWY-7154]
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7155]], 7-dehydroporiferasterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7155 PWY-7155]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6098]], diploterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-2541]], phytosterol biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]
 
−
** '''11''' reactions found over '''35''' reactions in the full pathway
 
−
* [[PWY-6109]], mangrove triterpenoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6109 PWY-6109]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21311 21311]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03200 R03200]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O23909 O23909]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=cycloartenol synthase}}
+
{{#set: common-name=shikimate 3-dehydrogenase (nadp+)}}
−
{{#set: ec-number=ec-5.4.99.8}}
+
{{#set: ec-number=ec-1.1.1.282}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:28, 26 August 2019

Reaction RXN-7968

  • direction:
    • left-to-right
  • common-name:
    • shikimate 3-dehydrogenase (nadp+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-9601&oldid=24234"