Difference between revisions of "RXN-9616"

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(Created page with "Category:reaction == Reaction 2.7.8.15-RXN == * direction: ** left-to-right * common-name: ** udp-n-acetylglucosamine—dolichyl-phosphate n-acetylglucosaminephosphotr...")
(Created page with "Category:reaction == Reaction RXN-17105 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.19 ec-1.14.19] == Reaction formula == * 1 CPD-...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction 2.7.8.15-RXN ==
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== Reaction RXN-17105 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** udp-n-acetylglucosamine—dolichyl-phosphate n-acetylglucosaminephosphotransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.15 ec-2.7.8.15]
+
** [http://enzyme.expasy.org/EC/1.14.19 ec-1.14.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DOLICHOLP]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[CPD-190]][c] '''+''' 1 [[UMP]][c]
+
* 1 [[CPD-12646]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-14407]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02910]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation initial phase (eukaryotic):
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* [[PWY-7725]], arachidonate biosynthesis V (8-detaturase, mammals):
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** '''16''' reactions found over '''19''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13289 13289]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01007 R01007]
 
−
* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P07286 P07286]
 
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** [http://www.uniprot.org/uniprot/P23338 P23338]
 
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** [http://www.uniprot.org/uniprot/P42864 P42864]
 
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** [http://www.uniprot.org/uniprot/P39465 P39465]
 
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** [http://www.uniprot.org/uniprot/Q9UY90 Q9UY90]
 
−
** [http://www.uniprot.org/uniprot/Q58513 Q58513]
 
−
** [http://www.uniprot.org/uniprot/P42867 P42867]
 
−
** [http://www.uniprot.org/uniprot/P42881 P42881]
 
−
** [http://www.uniprot.org/uniprot/P96000 P96000]
 
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** [http://www.uniprot.org/uniprot/Q9M2M5 Q9M2M5]
 
−
** [http://www.uniprot.org/uniprot/O22211 O22211]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=udp-n-acetylglucosamine—dolichyl-phosphate n-acetylglucosaminephosphotransferase}}
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{{#set: ec-number=ec-1.14.19}}
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{{#set: ec-number=ec-2.7.8.15}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 11:25, 15 January 2021

Reaction RXN-17105

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7725, arachidonate biosynthesis V (8-detaturase, mammals):
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-9616&oldid=115935"