Difference between revisions of "RXN-9623"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NADPH--FERRIHEMOPROTEIN-REDUCTASE-RXN NADPH--FERRIHEMOPROTEIN-REDUCTASE-RXN] == * direction: ** lef...")
 
(Created page with "Category:reaction == Reaction RXN-9623 == * direction: ** left-to-right * common-name: ** long-chain fatty acid-coa ligase ** palmitate-coa ligase * ec-number: ** [http://...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NADPH--FERRIHEMOPROTEIN-REDUCTASE-RXN NADPH--FERRIHEMOPROTEIN-REDUCTASE-RXN] ==
+
== Reaction RXN-9623 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** nadph-cytochrome p540 reductase
+
** long-chain fatty acid-coa ligase
−
** nadph-hemoprotein reductase
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** palmitate-coa ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.6.2.4 ec-1.6.2.4]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADPH]][c] '''+''' n [[Oxidized-hemoproteins]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' n [[Reduced-hemoproteins]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PALMITATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ01145]]
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* Gene: [[SJ08692]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06442]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13972]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ17016]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05591]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06441]]
+
* Gene: [[SJ03650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06443]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03066]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08690]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ17015]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* Gene: [[SJ08691]]
−
* Gene: [[SJ18055]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5972]], stearate biosynthesis I (animals):
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR99153
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30754 30754]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00106 R00106]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01280 R01280]
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* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P00389 P00389]
 
−
** [http://www.uniprot.org/uniprot/P19618 P19618]
 
−
** [http://www.uniprot.org/uniprot/P14779 P14779]
 
−
** [http://www.uniprot.org/uniprot/P37201 P37201]
 
−
** [http://www.uniprot.org/uniprot/Q07994 Q07994]
 
−
** [http://www.uniprot.org/uniprot/P16435 P16435]
 
−
** [http://www.uniprot.org/uniprot/O08336 O08336]
 
−
** [http://www.uniprot.org/uniprot/Q9P4E2 Q9P4E2]
 
−
** [http://www.uniprot.org/uniprot/P04175 P04175]
 
−
** [http://www.uniprot.org/uniprot/P00388 P00388]
 
−
** [http://www.uniprot.org/uniprot/Q39036 Q39036]
 
−
** [http://www.uniprot.org/uniprot/P37039 P37039]
 
−
** [http://www.uniprot.org/uniprot/P36587 P36587]
 
−
** [http://www.uniprot.org/uniprot/Q05001 Q05001]
 
−
** [http://www.uniprot.org/uniprot/Q96560 Q96560]
 
−
** [http://www.uniprot.org/uniprot/Q96561 Q96561]
 
−
** [http://www.uniprot.org/uniprot/Q43235 Q43235]
 
−
** [http://www.uniprot.org/uniprot/Q00141 Q00141]
 
−
** [http://www.uniprot.org/uniprot/P16603 P16603]
 
−
** [http://www.uniprot.org/uniprot/P50126 P50126]
 
−
** [http://www.uniprot.org/uniprot/Q9SB48 Q9SB48]
 
−
** [http://www.uniprot.org/uniprot/O04434 O04434]
 
−
** [http://www.uniprot.org/uniprot/Q40916 Q40916]
 
−
** [http://www.uniprot.org/uniprot/O24424 O24424]
 
−
** [http://www.uniprot.org/uniprot/O24425 O24425]
 
−
** [http://www.uniprot.org/uniprot/Q42830 Q42830]
 
−
** [http://www.uniprot.org/uniprot/Q9SUM3 Q9SUM3]
 
−
** [http://www.uniprot.org/uniprot/O48937 O48937]
 
−
** [http://www.uniprot.org/uniprot/O48938 O48938]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=nadph-cytochrome p540 reductase|nadph-hemoprotein reductase}}
+
{{#set: common-name=palmitate-coa ligase|long-chain fatty acid-coa ligase}}
−
{{#set: ec-number=ec-1.6.2.4}}
+
{{#set: ec-number=ec-6.2.1.3}}
 
{{#set: nb gene associated=7}}
 
{{#set: nb gene associated=7}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN-9623

  • direction:
    • left-to-right
  • common-name:
    • long-chain fatty acid-coa ligase
    • palmitate-coa ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis (type II fatty acid synthase):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5972, stearate biosynthesis I (animals):
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR99153
  • RHEA:
  • LIGAND-RXN:





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