Difference between revisions of "RXN-9632"

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(Created page with "Category:reaction == Reaction O-SUCCHOMOSERLYASE-RXN == * direction: ** reversible * common-name: ** cystathionine gamma-synthase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction RXN-9632 == * direction: ** left-to-right * common-name: ** 3-oxo-stearoyl-[acyl-carrier protein] synthase ** 3-oxoacyl-[acyl-carrier-protein...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction O-SUCCHOMOSERLYASE-RXN ==
+
== Reaction RXN-9632 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** cystathionine gamma-synthase
+
** 3-oxo-stearoyl-[acyl-carrier protein] synthase
 +
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.48 ec-2.5.1.48]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CYS]][c] '''+''' 1 [[O-SUCCINYL-L-HOMOSERINE]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Palmitoyl-ACPs]][c] '''=>''' 1 [[3-oxo-stearoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05357]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ18059]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ20026]]
+
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15983]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05358]]
+
* Gene: [[SJ04443]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00005]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15984]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
+
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants):
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-801]], homocysteine and cysteine interconversion:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR122910
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20397 20397]
+
{{#set: direction=left-to-right}}
−
* LIGAND-RXN:
+
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase|3-oxo-stearoyl-[acyl-carrier protein] synthase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03260 R03260]
+
{{#set: ec-number=ec-2.3.1.41}}
−
* UNIPROT:
+
{{#set: nb gene associated=7}}
−
** [http://www.uniprot.org/uniprot/P0A4K2 P0A4K2]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9CEC6 Q9CEC6]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P38675 P38675]
 
−
** [http://www.uniprot.org/uniprot/P24601 P24601]
 
−
** [http://www.uniprot.org/uniprot/P00935 P00935]
 
−
** [http://www.uniprot.org/uniprot/O04981 O04981]
 
−
** [http://www.uniprot.org/uniprot/O04982 O04982]
 
−
** [http://www.uniprot.org/uniprot/O81334 O81334]
 
−
** [http://www.uniprot.org/uniprot/Q79VD9 Q79VD9]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=cystathionine gamma-synthase}}
 
−
{{#set: ec-number=ec-2.5.1.48}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-9632

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-stearoyl-[acyl-carrier protein] synthase
    • 3-oxoacyl-[acyl-carrier-protein] synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5989, stearate biosynthesis II (bacteria and plants):
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR122910
  • Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxo-stearoyl-[acyl-carrier protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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