Difference between revisions of "RXN-9632"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7892 PWY-7892] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *...")
(Created page with "Category:reaction == Reaction O-SUCCHOMOSERLYASE-RXN == * direction: ** reversible * common-name: ** cystathionine gamma-synthase * ec-number: ** [http://enzyme.expasy.org...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7892 PWY-7892] ==
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== Reaction O-SUCCHOMOSERLYASE-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
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** reversible
 
* common-name:
 
* common-name:
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** trna-uridine 2-thiolation (bacteria)
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** cystathionine gamma-synthase
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== Reaction(s) found ==
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* ec-number:
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* [[RXN0-2023]]
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** [http://enzyme.expasy.org/EC/2.5.1.48 ec-2.5.1.48]
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* [[RXN0-308]]
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== Reaction formula ==
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* [[RXN0-5144]]
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* 1 [[CYS]][c] '''+''' 1 [[O-SUCCINYL-L-HOMOSERINE]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SUC]][c]
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== Reaction(s) not found ==
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18709 RXN-18709]
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* Gene: [[SJ05357]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18708 RXN-18708]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-7081 RXN0-7081]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18707 RXN-18707]
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* Gene: [[SJ20026]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18710 RXN-18710]
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** Category: [[annotation]]
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{{#set: taxonomic-range=tax-2}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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{{#set: common-name=trna-uridine 2-thiolation (bacteria)}}
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** Category: [[orthology]]
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{{#set: nb reaction found=3}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: completion rate=0.38}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=8}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ05358]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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== Pathway(s) ==
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* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine):
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-801]], homocysteine and cysteine interconversion:
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20397 20397]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03260 R03260]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P0A4K2 P0A4K2]
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** [http://www.uniprot.org/uniprot/Q9CEC6 Q9CEC6]
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** [http://www.uniprot.org/uniprot/P38675 P38675]
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** [http://www.uniprot.org/uniprot/P24601 P24601]
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** [http://www.uniprot.org/uniprot/P00935 P00935]
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** [http://www.uniprot.org/uniprot/O04981 O04981]
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** [http://www.uniprot.org/uniprot/O04982 O04982]
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** [http://www.uniprot.org/uniprot/O81334 O81334]
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** [http://www.uniprot.org/uniprot/Q79VD9 Q79VD9]
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{{#set: direction=reversible}}
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{{#set: common-name=cystathionine gamma-synthase}}
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{{#set: ec-number=ec-2.5.1.48}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:46, 18 December 2020

Reaction O-SUCCHOMOSERLYASE-RXN

  • direction:
    • reversible
  • common-name:
    • cystathionine gamma-synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-I9, L-cysteine biosynthesis VI (from L-methionine):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-801, homocysteine and cysteine interconversion:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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