Difference between revisions of "RXN-9655"
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(Created page with "Category:reaction == Reaction RXN-13616 == * direction: ** left-to-right * common-name: ** trans-δ2-decenoyl-coa hydratase ** enoyl-coa hydratase * ec-number: ** [ht...") |
(Created page with "Category:reaction == Reaction HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN == * direction: ** reversible * common-name: ** hydroxymethyl glutaryl-coa synthase * ec-number: ** [h...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** hydroxymethyl glutaryl-coa synthase |
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.3.3.10 ec-2.3.3.10] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ11593]] | |
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ06617]] |
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− | |||
− | |||
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− | |||
− | |||
− | |||
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-922]], mevalonate pathway I: |
− | ** '''5''' reactions found over ''' | + | ** '''7''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY-6174]], mevalonate pathway II (archaea): | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY66-367]], ketogenesis: | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7571]], ferrichrome A biosynthesis: | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7391]], isoprene biosynthesis II (engineered): | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7524]], mevalonate pathway III (archaea): | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10191 10191] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01978 R01978] |
− | {{#set: direction= | + | * UNIPROT: |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P13704 P13704] |
− | {{#set: ec-number=ec- | + | ** [http://www.uniprot.org/uniprot/P22791 P22791] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P54870 P54870] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/P54869 P54869] |
+ | ** [http://www.uniprot.org/uniprot/O51626 O51626] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CFA9 Q9CFA9] | ||
+ | ** [http://www.uniprot.org/uniprot/P17425 P17425] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7LZE7 Q7LZE7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01581 Q01581] | ||
+ | ** [http://www.uniprot.org/uniprot/P54961 P54961] | ||
+ | ** [http://www.uniprot.org/uniprot/P54839 P54839] | ||
+ | ** [http://www.uniprot.org/uniprot/P54874 P54874] | ||
+ | ** [http://www.uniprot.org/uniprot/P54868 P54868] | ||
+ | ** [http://www.uniprot.org/uniprot/P54873 P54873] | ||
+ | ** [http://www.uniprot.org/uniprot/P93773 P93773] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=hydroxymethyl glutaryl-coa synthase}} | ||
+ | {{#set: ec-number=ec-2.3.3.10}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=6}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:25, 15 January 2021
Contents
Reaction HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN
- direction:
- reversible
- common-name:
- hydroxymethyl glutaryl-coa synthase
- ec-number:
Reaction formula
- 1 ACETOACETYL-COA[c] + 1 ACETYL-COA[c] + 1 WATER[c] <=> 1 3-HYDROXY-3-METHYL-GLUTARYL-COA[c] + 1 CO-A[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ11593
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06617
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-922, mevalonate pathway I:
- 7 reactions found over 7 reactions in the full pathway
- PWY-6174, mevalonate pathway II (archaea):
- 6 reactions found over 7 reactions in the full pathway
- PWY66-367, ketogenesis:
- 4 reactions found over 5 reactions in the full pathway
- PWY-7571, ferrichrome A biosynthesis:
- 1 reactions found over 5 reactions in the full pathway
- PWY-7391, isoprene biosynthesis II (engineered):
- 7 reactions found over 8 reactions in the full pathway
- PWY-7524, mevalonate pathway III (archaea):
- 5 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links