Difference between revisions of "RXN-9655"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6343 PWY-6343] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *...")
(Created page with "Category:reaction == Reaction RXN-9655 == * direction: ** left-to-right * common-name: ** fatty acid synthase ** 3-hydroxydecanoyl-[acp] dehydrase * ec-number: ** [http://...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6343 PWY-6343] ==
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== Reaction RXN-9655 ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
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** left-to-right
 
* common-name:
 
* common-name:
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** ferulate degradation
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** fatty acid synthase
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== Reaction(s) found ==
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** 3-hydroxydecanoyl-[acp] dehydrase
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* [[6.2.1.34-RXN]]
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* ec-number:
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== Reaction(s) not found ==
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** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.101-RXN 4.2.1.101-RXN]
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.1.2.41-RXN 4.1.2.41-RXN]
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** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
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{{#set: taxonomic-range=tax-2}}
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* synonymous:
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{{#set: common-name=ferulate degradation}}
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** β-hydroxydecanoate dehydrase
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{{#set: nb reaction found=1}}
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** β-hydroxydecanoyl thiol ester dehydrase
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{{#set: completion rate=0.33}}
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** (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
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{{#set: nb total reaction=3}}
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** faba
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** β-hydroxyacyl-acp dehydrase
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** β-hydroxyacyl-acyl carrier protein dehydratase
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** d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
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** hddase
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== Reaction formula ==
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* 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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== Gene(s) associated with this reaction  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ17743]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ03883]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ06617]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ04769]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ00613]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ00320]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ13014]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ04443]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ10275]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ19629]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ06616]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ10624]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ11672]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ15983]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ06944]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ18059]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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</div>
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== Pathway(s)  ==
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* [[PWY0-862]], (5Z)-dodecenoate biosynthesis I:
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR122928
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{{#set: direction=left-to-right}}
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{{#set: common-name=fatty acid synthase|3-hydroxydecanoyl-[acp] dehydrase}}
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{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.85|ec-2.3.1.86}}
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{{#set: synonymous=&beta;-hydroxydecanoate dehydrase|&beta;-hydroxydecanoyl thiol ester dehydrase|&beta;-hydroxyacyl-acp dehydrase|d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase|hddase|&beta;-hydroxyacyl-acyl carrier protein dehydratase|faba|(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase}}
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{{#set: nb gene associated=16}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-9655

  • direction:
    • left-to-right
  • common-name:
    • fatty acid synthase
    • 3-hydroxydecanoyl-[acp] dehydrase
  • ec-number:
  • synonymous:
    • β-hydroxydecanoate dehydrase
    • β-hydroxydecanoyl thiol ester dehydrase
    • (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
    • faba
    • β-hydroxyacyl-acp dehydrase
    • β-hydroxyacyl-acyl carrier protein dehydratase
    • d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
    • hddase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-862, (5Z)-dodecenoate biosynthesis I:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis (type II fatty acid synthase):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis (type I fatty acid synthase):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR122928

Property "Common-name" (as page type) with input value "3-hydroxydecanoyl-[acp] dehydrase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

  • Property "Synonymous" (as page type) with input value "d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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