Difference between revisions of "RXN-9655"
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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=t...") |
(Created page with "Category:reaction == Reaction RXN-9655 == * direction: ** left-to-right * common-name: ** fatty acid synthase ** 3-hydroxydecanoyl-[acp] dehydrase * ec-number: ** [http://...") |
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− | [[Category: | + | [[Category:reaction]] |
− | == | + | == Reaction RXN-9655 == |
− | * | + | * direction: |
− | ** | + | ** left-to-right |
− | |||
* common-name: | * common-name: | ||
− | ** | + | ** fatty acid synthase |
− | == Reaction(s) | + | ** 3-hydroxydecanoyl-[acp] dehydrase |
− | * [[ | + | * ec-number: |
− | * [[ | + | ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] |
− | * [[ | + | ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] |
− | * [[ | + | ** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59] |
− | * [[ | + | * synonymous: |
− | * [[ | + | ** β-hydroxydecanoate dehydrase |
− | == | + | ** β-hydroxydecanoyl thiol ester dehydrase |
− | + | ** (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase | |
− | {{#set: | + | ** faba |
− | {{#set: | + | ** β-hydroxyacyl-acp dehydrase |
− | {{#set: nb | + | ** β-hydroxyacyl-acyl carrier protein dehydratase |
− | {{#set: | + | ** d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase |
− | {{#set: | + | ** hddase |
+ | == Reaction formula == | ||
+ | * 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c] | ||
+ | == Gene(s) associated with this reaction == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * Gene: [[SJ17743]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ03883]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ06617]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ04769]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ00613]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ00320]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ13014]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ04443]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ10275]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ19629]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ06616]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ10624]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ11672]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ15983]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ06944]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ18059]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | </div> | ||
+ | == Pathway(s) == | ||
+ | * [[PWY0-862]], (5Z)-dodecenoate biosynthesis I: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase): | ||
+ | ** '''31''' reactions found over '''31''' reactions in the full pathway | ||
+ | * [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase): | ||
+ | ** '''31''' reactions found over '''31''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | == External links == | ||
+ | * METANETX-RXN : MNXR122928 | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=fatty acid synthase|3-hydroxydecanoyl-[acp] dehydrase}} | ||
+ | {{#set: ec-number=ec-4.2.1.59|ec-2.3.1.85|ec-2.3.1.86}} | ||
+ | {{#set: synonymous=β-hydroxydecanoate dehydrase|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxyacyl-acp dehydrase|d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase|hddase|β-hydroxyacyl-acyl carrier protein dehydratase|faba|(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase}} | ||
+ | {{#set: nb gene associated=16}} | ||
+ | {{#set: nb pathway associated=3}} | ||
+ | {{#set: reconstruction category=annotation}} | ||
+ | {{#set: reconstruction tool=pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=saccharina_japonica_genome}} |
Latest revision as of 11:23, 18 March 2021
Contents
Reaction RXN-9655
- direction:
- left-to-right
- common-name:
- fatty acid synthase
- 3-hydroxydecanoyl-[acp] dehydrase
- ec-number:
- synonymous:
- β-hydroxydecanoate dehydrase
- β-hydroxydecanoyl thiol ester dehydrase
- (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
- faba
- β-hydroxyacyl-acp dehydrase
- β-hydroxyacyl-acyl carrier protein dehydratase
- d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
- hddase
Reaction formula
- 1 Beta-hydroxydecanoyl-ACPs[c] => 1 Trans-D2-decenoyl-ACPs[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ17743
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ03883
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ06617
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ04769
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00613
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00320
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ13014
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ04443
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ10275
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ19629
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ06616
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ10624
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ11672
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ15983
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ06944
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ18059
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-862, (5Z)-dodecenoate biosynthesis I:
- 5 reactions found over 6 reactions in the full pathway
- PWY-5971, palmitate biosynthesis (type II fatty acid synthase):
- 31 reactions found over 31 reactions in the full pathway
- PWY-5994, palmitate biosynthesis (type I fatty acid synthase):
- 31 reactions found over 31 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR122928
Property "Common-name" (as page type) with input value "3-hydroxydecanoyl-[acp] dehydrase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
- Property "Synonymous" (as page type) with input value "d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
- Property "Synonymous" (as page type) with input value "(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.