Difference between revisions of "RXN-9657"

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(Created page with "Category:reaction == Reaction PYRROLINECARBREDUCT-RXN == * direction: ** left-to-right * common-name: ** pyrroline-5-carboxylate reductase * ec-number: ** [http://enzyme.e...")
(Created page with "Category:reaction == Reaction ExchangeSeed-CARBON-DIOXIDE == * direction: ** reversible == Reaction formula == * 1.0 CARBON-DIOXIDE[C-BOUNDARY] '''<=>''' 1.0 CARBON-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRROLINECARBREDUCT-RXN ==
+
== Reaction ExchangeSeed-CARBON-DIOXIDE ==
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
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* common-name:
 
−
** pyrroline-5-carboxylate reductase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.5.1.2 ec-1.5.1.2]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[PRO]][c]
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* 1.0 [[CARBON-DIOXIDE]][C-BOUNDARY] '''<=>''' 1.0 [[CARBON-DIOXIDE]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22264]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ15062]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ11815]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3341]], L-proline biosynthesis III (from L-ornithine):
 
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** '''4''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PROSYN-PWY]], L-proline biosynthesis I (from L-glutamate):
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6344]], L-ornithine degradation II (Stickland reaction):
 
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** '''2''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-4981]], L-proline biosynthesis II (from arginine):
 
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** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=reversible}}
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* RHEA:
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{{#set: nb gene associated=0}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14107 14107]
+
{{#set: nb pathway associated=0}}
−
* LIGAND-RXN:
+
{{#set: reconstruction category=manual}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01251 R01251]
+
{{#set: reconstruction tool=curation}}
−
* UNIPROT:
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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** [http://www.uniprot.org/uniprot/P32322 P32322]
+
{{#set: reconstruction source=import_from_medium}}
−
** [http://www.uniprot.org/uniprot/P27771 P27771]
 
−
** [http://www.uniprot.org/uniprot/Q9CEF7 Q9CEF7]
 
−
** [http://www.uniprot.org/uniprot/P14383 P14383]
 
−
** [http://www.uniprot.org/uniprot/Q9PNL8 Q9PNL8]
 
−
** [http://www.uniprot.org/uniprot/Q9JWW2 Q9JWW2]
 
−
** [http://www.uniprot.org/uniprot/Q12740 Q12740]
 
−
** [http://www.uniprot.org/uniprot/P22008 P22008]
 
−
** [http://www.uniprot.org/uniprot/P54904 P54904]
 
−
** [http://www.uniprot.org/uniprot/P0A9L8 P0A9L8]
 
−
** [http://www.uniprot.org/uniprot/P17817 P17817]
 
−
** [http://www.uniprot.org/uniprot/P32263 P32263]
 
−
** [http://www.uniprot.org/uniprot/Q12641 Q12641]
 
−
** [http://www.uniprot.org/uniprot/P46725 P46725]
 
−
** [http://www.uniprot.org/uniprot/P74572 P74572]
 
−
** [http://www.uniprot.org/uniprot/Q04708 Q04708]
 
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</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=pyrroline-5-carboxylate reductase}}
 
−
{{#set: ec-number=ec-1.5.1.2}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 15:02, 5 January 2021

Reaction ExchangeSeed-CARBON-DIOXIDE

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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