Difference between revisions of "RXN-9670"

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(Created page with "Category:reaction == Reaction 3.1.3.46-RXN == * direction: ** left-to-right * common-name: ** fructose-2,6-bisphosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.1....")
(Created page with "Category:reaction == Reaction RXN-15829 == * direction: ** left-to-right * common-name: ** ubiquinol-cytochrome-c reductase ** ubiquinol--cytochrome-c reductase * ec-numbe...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.3.46-RXN ==
+
== Reaction RXN-15829 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fructose-2,6-bisphosphatase
+
** ubiquinol-cytochrome-c reductase
 +
** ubiquinol--cytochrome-c reductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.46 ec-3.1.3.46]
+
** [http://enzyme.expasy.org/EC/1.10.2.2 ec-1.10.2.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-535]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[Pi]][c]
+
* 4 [[PROTON]][c] '''+''' 2 [[Reduced-CycA1-cytochromes]][e] '''+''' 1 [[Ubiquinones]][c] '''=>''' 2 [[Oxidized-CycA1-cytochromes]][e] '''+''' 2 [[PROTON]][e] '''+''' 1 [[Ubiquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ16637]]
−
* Gene: [[SJ16286]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09480]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21480]]
+
* Gene: [[SJ13715]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12299]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03483]]
+
* Gene: [[SJ03106]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04557]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09481]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12908]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11840]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-423]], fructose 2,6-bisphosphate biosynthesis:
+
* [[PWY-6692]], Fe(II) oxidation:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17290 17290]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00763 R00763]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P26285 P26285]
 
−
** [http://www.uniprot.org/uniprot/P25114 P25114]
 
−
** [http://www.uniprot.org/uniprot/Q7M3I3 Q7M3I3]
 
−
** [http://www.uniprot.org/uniprot/P49872 P49872]
 
−
** [http://www.uniprot.org/uniprot/Q28830 Q28830]
 
−
** [http://www.uniprot.org/uniprot/Q91348 Q91348]
 
−
** [http://www.uniprot.org/uniprot/Q9JJH5 Q9JJH5]
 
−
** [http://www.uniprot.org/uniprot/Q16875 Q16875]
 
−
** [http://www.uniprot.org/uniprot/P07953 P07953]
 
−
** [http://www.uniprot.org/uniprot/P16118 P16118]
 
−
** [http://www.uniprot.org/uniprot/P32604 P32604]
 
−
** [http://www.uniprot.org/uniprot/P70265 P70265]
 
−
** [http://www.uniprot.org/uniprot/P70266 P70266]
 
−
** [http://www.uniprot.org/uniprot/O24559 O24559]
 
−
** [http://www.uniprot.org/uniprot/O81398 O81398]
 
−
** [http://www.uniprot.org/uniprot/O64983 O64983]
 
−
** [http://www.uniprot.org/uniprot/Q9URZ7 Q9URZ7]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fructose-2,6-bisphosphatase}}
+
{{#set: common-name=ubiquinol--cytochrome-c reductase|ubiquinol-cytochrome-c reductase}}
−
{{#set: ec-number=ec-3.1.3.46}}
+
{{#set: ec-number=ec-1.10.2.2}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:17, 14 January 2021

Reaction RXN-15829

  • direction:
    • left-to-right
  • common-name:
    • ubiquinol-cytochrome-c reductase
    • ubiquinol--cytochrome-c reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6692, Fe(II) oxidation:
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-9670&oldid=89763"