Difference between revisions of "RXN-9680"

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(Created page with "Category:reaction == Reaction 4-COUMARATE--COA-LIGASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.12 ec-6.2.1.12] == Reaction f...")
(Created page with "Category:reaction == Reaction RXN-9680 == * direction: ** left-to-right * common-name: ** dimethylglycine-betaine methyltransferase * ec-number: ** [http://enzyme.expasy.o...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 4-COUMARATE--COA-LIGASE-RXN ==
+
== Reaction RXN-9680 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** dimethylglycine-betaine methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.12 ec-6.2.1.12]
+
** [http://enzyme.expasy.org/EC/2.1.1.161 ec-2.1.1.161]
 +
* synonymous:
 +
** gsdmt
 +
** sdmt
 +
** sarcosine-dimethylglycine methyltransferase
 +
** sarcosine dimethylglycine n-methyltransferase
 +
** apdmt
 +
** glycine sarcosine dimethylglycine n-methyltransferase
 +
** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[COUMARATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[BETAINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03066]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16901]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
== Pathway(s)  ==
 
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-7397]], naringenin biosynthesis (engineered):
+
* Gene: [[SJ12118]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** Category: [[annotation]]
−
* [[PWY-6320]], phaselate biosynthesis:
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
* Gene: [[SJ10116]]
−
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis III (plants):
+
** Category: [[annotation]]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
+
* Gene: [[SJ12128]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** Category: [[annotation]]
−
* [[PWY-361]], phenylpropanoid biosynthesis:
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** '''7''' reactions found over '''15''' reactions in the full pathway
+
* Gene: [[SJ12119]]
−
* [[PWY-5135]], xanthohumol biosynthesis:
+
** Category: [[annotation]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* [[PWY-7398]], coumarins biosynthesis (engineered):
+
* Gene: [[SJ11087]]
−
** '''3''' reactions found over '''13''' reactions in the full pathway
+
** Category: [[annotation]]
−
* [[PWY-7046]], 4-coumarate degradation (anaerobic):
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
* Gene: [[SJ14716]]
−
* [[PWY-7897]], flavonoid di-C-glucosylation:
+
** Category: [[annotation]]
−
** '''3''' reactions found over '''15''' reactions in the full pathway
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes):
+
* Gene: [[SJ18177]]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** Category: [[annotation]]
−
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered):
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* Gene: [[SJ12116]]
−
* [[PWY-6982]], umbelliferone biosynthesis:
+
** Category: [[annotation]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03081]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02539]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02540]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 +
== Pathway(s)  ==
 +
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR110929
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19642 19642]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10073 10073]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01616 R01616]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07244 R07244]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P31684 P31684]
 
−
** [http://www.uniprot.org/uniprot/P31685 P31685]
 
−
** [http://www.uniprot.org/uniprot/Q9SWH8 Q9SWH8]
 
−
** [http://www.uniprot.org/uniprot/Q9SWH7 Q9SWH7]
 
−
** [http://www.uniprot.org/uniprot/P17814 P17814]
 
−
** [http://www.uniprot.org/uniprot/P31687 P31687]
 
−
** [http://www.uniprot.org/uniprot/Q8S5C2 Q8S5C2]
 
−
** [http://www.uniprot.org/uniprot/P14912 P14912]
 
−
** [http://www.uniprot.org/uniprot/P14913 P14913]
 
−
** [http://www.uniprot.org/uniprot/P31686 P31686]
 
−
** [http://www.uniprot.org/uniprot/Q42524 Q42524]
 
−
** [http://www.uniprot.org/uniprot/Q42943 Q42943]
 
−
** [http://www.uniprot.org/uniprot/Q42982 Q42982]
 
−
** [http://www.uniprot.org/uniprot/P93360 P93360]
 
−
** [http://www.uniprot.org/uniprot/P93361 P93361]
 
−
** [http://www.uniprot.org/uniprot/O24146 O24146]
 
−
** [http://www.uniprot.org/uniprot/O48868 O48868]
 
−
** [http://www.uniprot.org/uniprot/O48869 O48869]
 
−
** [http://www.uniprot.org/uniprot/O81139 O81139]
 
−
** [http://www.uniprot.org/uniprot/O81140 O81140]
 
−
** [http://www.uniprot.org/uniprot/P41636 P41636]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-6.2.1.12}}
+
{{#set: common-name=dimethylglycine-betaine methyltransferase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-2.1.1.161}}
−
{{#set: nb pathway associated=12}}
+
{{#set: synonymous=sdmt|sarcosine dimethylglycine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase|sarcosine-dimethylglycine methyltransferase|gsdmt|apdmt}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb gene associated=11}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-9680

  • direction:
    • left-to-right
  • common-name:
    • dimethylglycine-betaine methyltransferase
  • ec-number:
  • synonymous:
    • gsdmt
    • sdmt
    • sarcosine-dimethylglycine methyltransferase
    • sarcosine dimethylglycine n-methyltransferase
    • apdmt
    • glycine sarcosine dimethylglycine n-methyltransferase
    • s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P541-PWY, glycine betaine biosynthesis IV (from glycine):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004, glycine betaine biosynthesis V (from glycine):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR110929
  • RHEA:
  • LIGAND-RXN:






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