Difference between revisions of "RXN-9680"

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(Created page with "Category:reaction == Reaction TransportSeed-CU+ == * direction: ** left-to-right == Reaction formula == * 1.0 CU+[e] '''=>''' 1.0 CU+[c] == Gene(s) associated with...")
(Created page with "Category:reaction == Reaction RXN-9680 == * direction: ** left-to-right * common-name: ** dimethylglycine-betaine methyltransferase * ec-number: ** [http://enzyme.expasy.o...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TransportSeed-CU+ ==
+
== Reaction RXN-9680 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** dimethylglycine-betaine methyltransferase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.1.1.161 ec-2.1.1.161]
 +
* synonymous:
 +
** gsdmt
 +
** sdmt
 +
** sarcosine-dimethylglycine methyltransferase
 +
** sarcosine dimethylglycine n-methyltransferase
 +
** apdmt
 +
** glycine sarcosine dimethylglycine n-methyltransferase
 +
** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CU+]][e] '''=>''' 1.0 [[CU+]][c]
+
* 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[BETAINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ12118]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12128]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12119]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11087]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14716]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18177]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03081]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02539]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02540]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR110929
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10073 10073]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07244 R07244]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=dimethylglycine-betaine methyltransferase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-2.1.1.161}}
−
{{#set: reconstruction category=manual}}
+
{{#set: synonymous=sdmt|sarcosine dimethylglycine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase|sarcosine-dimethylglycine methyltransferase|gsdmt|apdmt}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: nb gene associated=11}}
−
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-9680

  • direction:
    • left-to-right
  • common-name:
    • dimethylglycine-betaine methyltransferase
  • ec-number:
  • synonymous:
    • gsdmt
    • sdmt
    • sarcosine-dimethylglycine methyltransferase
    • sarcosine dimethylglycine n-methyltransferase
    • apdmt
    • glycine sarcosine dimethylglycine n-methyltransferase
    • s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P541-PWY, glycine betaine biosynthesis IV (from glycine):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004, glycine betaine biosynthesis V (from glycine):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR110929
  • RHEA:
  • LIGAND-RXN:






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