Difference between revisions of "RXN-969"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MCDH MCDH] == * direction: ** left-to-right * common-name: ** 2-methylacyl-coa dehydrogenase, 2-met...")
(Created page with "Category:reaction == Reaction CARBPSYN-RXN == * direction: ** left-to-right * common-name: ** carbamoyl phosphate synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MCDH MCDH] ==
+
== Reaction CARBPSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-methylacyl-coa dehydrogenase, 2-methylprop-2-enoyl-coa forming
+
** carbamoyl phosphate synthetase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.3.5.5 ec-6.3.5.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[FAD]][m] '''+''' 1.0 [[ISOBUTYRYL-COA]][m] '''=>''' 1.0 [[FADH2]][m] '''+''' 1.0 [[METHACRYLYL-COA]][m]
+
* 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07241]]
+
* Gene: [[SJ17851]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15949]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine):
 +
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5686]], UMP biosynthesis I:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18634 18634]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P08955 P08955]
 +
** [http://www.uniprot.org/uniprot/P13258 P13258]
 +
** [http://www.uniprot.org/uniprot/P38099 P38099]
 +
** [http://www.uniprot.org/uniprot/P27708 P27708]
 +
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
 +
** [http://www.uniprot.org/uniprot/O28994 O28994]
 +
** [http://www.uniprot.org/uniprot/P57689 P57689]
 +
** [http://www.uniprot.org/uniprot/P38098 P38098]
 +
** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
 +
** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
 +
** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
 +
** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
 +
** [http://www.uniprot.org/uniprot/P25993 P25993]
 +
** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
 +
** [http://www.uniprot.org/uniprot/P25994 P25994]
 +
** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
 +
** [http://www.uniprot.org/uniprot/O25577 O25577]
 +
** [http://www.uniprot.org/uniprot/P52557 P52557]
 +
** [http://www.uniprot.org/uniprot/P46537 P46537]
 +
** [http://www.uniprot.org/uniprot/P18185 P18185]
 +
** [http://www.uniprot.org/uniprot/P07259 P07259]
 +
** [http://www.uniprot.org/uniprot/P20054 P20054]
 +
** [http://www.uniprot.org/uniprot/P05990 P05990]
 +
** [http://www.uniprot.org/uniprot/P14845 P14845]
 +
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 +
** [http://www.uniprot.org/uniprot/Q92115 Q92115]
 +
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
 +
** [http://www.uniprot.org/uniprot/P03965 P03965]
 +
** [http://www.uniprot.org/uniprot/P07258 P07258]
 +
** [http://www.uniprot.org/uniprot/P00968 P00968]
 +
** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
 +
** [http://www.uniprot.org/uniprot/P93345 P93345]
 +
** [http://www.uniprot.org/uniprot/Q27732 Q27732]
 +
** [http://www.uniprot.org/uniprot/Q27448 Q27448]
 +
** [http://www.uniprot.org/uniprot/O50236 O50236]
 +
** [http://www.uniprot.org/uniprot/O94313 O94313]
 +
** [http://www.uniprot.org/uniprot/Q59968 Q59968]
 +
** [http://www.uniprot.org/uniprot/Q59969 Q59969]
 +
** [http://www.uniprot.org/uniprot/O50301 O50301]
 +
** [http://www.uniprot.org/uniprot/O50302 O50302]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-methylacyl-coa dehydrogenase, 2-methylprop-2-enoyl-coa forming}}
+
{{#set: common-name=carbamoyl phosphate synthetase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-6.3.5.5}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}

Revision as of 20:40, 18 December 2020

Reaction CARBPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • carbamoyl phosphate synthetase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7400, L-arginine biosynthesis IV (archaebacteria):
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine):
    • 5 reactions found over 4 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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