Difference between revisions of "RXN-9912"

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(Created page with "Category:reaction == Reaction RETINOL-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** all-trans-retinol dehydrogenase (nad) ** all-trans-retinol dehydrog...")
(Created page with "Category:reaction == Reaction RXN-9912 == * direction: ** left-to-right * common-name: ** 4-chlorosalicylate monooxygenase ** salicylate 1-monooxygenase * ec-number: ** [h...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RETINOL-DEHYDROGENASE-RXN ==
+
== Reaction RXN-9912 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** all-trans-retinol dehydrogenase (nad)
+
** 4-chlorosalicylate monooxygenase
−
** all-trans-retinol dehydrogenase
+
** salicylate 1-monooxygenase
−
** retinol dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.105 ec-1.1.1.105]
+
** [http://enzyme.expasy.org/EC/1.14.13.1 ec-1.14.13.1]
 
* synonymous:
 
* synonymous:
−
** retinal reductase
+
** 4-chlorosalicylate hydroxylase
−
** all-trans retinol dehydrogenase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-13524]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[RETINAL]][c]
+
* 1 [[CPD-10576]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-9152]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ21101]]
−
* Gene: [[SJ05274]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ21322]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12574]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05276]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05277]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02723]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21312]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19151]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20291]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21601]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10028]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05275]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6107]], chlorosalicylate degradation:
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR123074
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21287 21287]
+
{{#set: direction=left-to-right}}
−
* LIGAND-RXN:
+
{{#set: common-name=4-chlorosalicylate monooxygenase|salicylate 1-monooxygenase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02124 R02124]
+
{{#set: ec-number=ec-1.14.13.1}}
−
* UNIPROT:
+
{{#set: synonymous=4-chlorosalicylate hydroxylase}}
−
** [http://www.uniprot.org/uniprot/P50169 P50169]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/Q64437 Q64437]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P40394 P40394]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P50170 P50170]
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=all-trans-retinol dehydrogenase (nad)|all-trans-retinol dehydrogenase|retinol dehydrogenase}}
 
−
{{#set: ec-number=ec-1.1.1.105}}
 
−
{{#set: synonymous=all-trans retinol dehydrogenase|retinal reductase}}
 
−
{{#set: nb gene associated=12}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-9912

  • direction:
    • left-to-right
  • common-name:
    • 4-chlorosalicylate monooxygenase
    • salicylate 1-monooxygenase
  • ec-number:
  • synonymous:
    • 4-chlorosalicylate hydroxylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6107, chlorosalicylate degradation:
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123074






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