Difference between revisions of "RXN-9951"

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(Created page with "Category:reaction == Reaction UGD-RXN == * direction: ** left-to-right * common-name: ** udp-glucose 6-dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.22...")
(Created page with "Category:reaction == Reaction RXN-9951 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UGD-RXN ==
+
== Reaction RXN-9951 ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** udp-glucose 6-dehydrogenase
+
** isocitrate dehydrogenase (nadp+)
−
* ec-number:
+
** nadp-dependent isocitrate dehydrogenase
−
** [http://enzyme.expasy.org/EC/1.1.1.22 ec-1.1.1.22]
+
* synonymous:
 +
** isocitrate dehydrogenase (nadp-dependent)
 +
** nadp-dependent isocitric dehydrogenase
 +
** nadp+-linked isocitrate dehydrogenase
 +
** isocitrate (nadp) dehydrogenase
 +
** idp
 +
** idp3
 +
** idh (ambiguous)
 +
** oxalsuccinic decarboxylase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** nadp+-icdh
 +
** nadp-specific isocitrate dehydrogenase
 +
** idp2
 +
** nadp-linked isocitrate dehydrogenase
 +
** nadp+-idh
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** idp1
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** oxalosuccinate decarboxylase
 +
** nadp isocitric dehydrogenase
 +
</div>
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12575]][c] '''+''' 2 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[NADH]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[UDP-GLUCURONATE]][c]
+
* 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16894]]
+
* Gene: [[SJ08749]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03911]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ11024]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11033]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ11025]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7346]], UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose):
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7820]], teichuronic acid biosynthesis (B. subtilis 168):
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR123084
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23597 23597]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25591 25591]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00286 R00286]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q8NKX0 Q8NKX0]
+
{{#set: common-name=nadp-dependent isocitrate dehydrogenase|isocitrate dehydrogenase (nadp+)}}
−
** [http://www.uniprot.org/uniprot/Q9PML6 Q9PML6]
+
{{#set: synonymous=idp2|idh (ambiguous)|nadp+-icdh|isocitrate dehydrogenase (nadp-dependent)|idp1|idp|nadp+-linked isocitrate dehydrogenase|nadp isocitric dehydrogenase|nadp+-idh|nadp-dependent isocitric dehydrogenase|oxalsuccinic decarboxylase|isocitrate (nadp) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|nadp-specific isocitrate dehydrogenase|dual-cofactor-specific isocitrate dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|oxalosuccinate decarboxylase|idp3|nadp-linked isocitrate dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/Q58454 Q58454]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/Q47329 Q47329]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q96558 Q96558]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/O41091 O41091]
 
−
** [http://www.uniprot.org/uniprot/Q9RMC2 Q9RMC2]
 
−
** [http://www.uniprot.org/uniprot/O54068 O54068]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=udp-glucose 6-dehydrogenase}}
 
−
{{#set: ec-number=ec-1.1.1.22}}
 
−
{{#set: nb gene associated=5}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-9951

  • direction:
    • reversible
  • common-name:
    • isocitrate dehydrogenase (nadp+)
    • nadp-dependent isocitrate dehydrogenase
  • synonymous:
    • isocitrate dehydrogenase (nadp-dependent)
    • nadp-dependent isocitric dehydrogenase
    • nadp+-linked isocitrate dehydrogenase
    • isocitrate (nadp) dehydrogenase
    • idp
    • idp3
    • idh (ambiguous)
    • oxalsuccinic decarboxylase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • nadp+-icdh
    • nadp-specific isocitrate dehydrogenase
    • idp2
    • nadp-linked isocitrate dehydrogenase
    • nadp+-idh
    • dual-cofactor-specific isocitrate dehydrogenase
    • idp1
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • oxalosuccinate decarboxylase
    • nadp isocitric dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR123084
  • RHEA:
  • LIGAND-RXN:





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