Difference between revisions of "RXN-9951"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=N-ACETYLTRANSFER-RXN N-ACETYLTRANSFER-RXN] == * direction: ** reversible * common-name: ** n-acetyl...")
(Created page with "Category:reaction == Reaction RXN-9951 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=N-ACETYLTRANSFER-RXN N-ACETYLTRANSFER-RXN] ==
+
== Reaction RXN-9951 ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** n-acetylglutamate synthase
+
** isocitrate dehydrogenase (nadp+)
−
** acetyl-coa:l-glutamate n-acetyltransferase
+
** nadp-dependent isocitrate dehydrogenase
−
* ec-number:
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/2.3.1.1 ec-2.3.1.1]
+
** isocitrate dehydrogenase (nadp-dependent)
 +
** nadp-dependent isocitric dehydrogenase
 +
** nadp+-linked isocitrate dehydrogenase
 +
** isocitrate (nadp) dehydrogenase
 +
** idp
 +
** idp3
 +
** idh (ambiguous)
 +
** oxalsuccinic decarboxylase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** nadp+-icdh
 +
** nadp-specific isocitrate dehydrogenase
 +
** idp2
 +
** nadp-linked isocitrate dehydrogenase
 +
** nadp+-idh
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** idp1
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** oxalosuccinate decarboxylase
 +
** nadp isocitric dehydrogenase
 +
</div>
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 1 [[GLT]][c] '''<=>''' 1 [[ACETYL-GLU]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18007]]
+
* Gene: [[SJ08749]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05827]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[GLUTORN-PWY]], L-ornithine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTORN-PWY GLUTORN-PWY]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR123084
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24295 24295]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25591 25591]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00259 R00259]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9JW21 Q9JW21]
 
−
** [http://www.uniprot.org/uniprot/P63574 P63574]
 
−
** [http://www.uniprot.org/uniprot/Q12643 Q12643]
 
−
** [http://www.uniprot.org/uniprot/P0A6C5 P0A6C5]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=n-acetylglutamate synthase|acetyl-coa:l-glutamate n-acetyltransferase}}
+
{{#set: common-name=nadp-dependent isocitrate dehydrogenase|isocitrate dehydrogenase (nadp+)}}
−
{{#set: ec-number=ec-2.3.1.1}}
+
{{#set: synonymous=idp2|idh (ambiguous)|nadp+-icdh|isocitrate dehydrogenase (nadp-dependent)|idp1|idp|nadp+-linked isocitrate dehydrogenase|nadp isocitric dehydrogenase|nadp+-idh|nadp-dependent isocitric dehydrogenase|oxalsuccinic decarboxylase|isocitrate (nadp) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|nadp-specific isocitrate dehydrogenase|dual-cofactor-specific isocitrate dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|oxalosuccinate decarboxylase|idp3|nadp-linked isocitrate dehydrogenase}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-9951

  • direction:
    • reversible
  • common-name:
    • isocitrate dehydrogenase (nadp+)
    • nadp-dependent isocitrate dehydrogenase
  • synonymous:
    • isocitrate dehydrogenase (nadp-dependent)
    • nadp-dependent isocitric dehydrogenase
    • nadp+-linked isocitrate dehydrogenase
    • isocitrate (nadp) dehydrogenase
    • idp
    • idp3
    • idh (ambiguous)
    • oxalsuccinic decarboxylase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • nadp+-icdh
    • nadp-specific isocitrate dehydrogenase
    • idp2
    • nadp-linked isocitrate dehydrogenase
    • nadp+-idh
    • dual-cofactor-specific isocitrate dehydrogenase
    • idp1
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • oxalosuccinate decarboxylase
    • nadp isocitric dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR123084
  • RHEA:
  • LIGAND-RXN:





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