Difference between revisions of "RXN-9952"

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(Created page with "Category:reaction == Reaction LINOLEOYL-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.1.2 ec-3.1.2] == Reaction formula == * 1 CPD-...")
(Created page with "Category:reaction == Reaction RXN-9952 == * direction: ** left-to-right * common-name: ** phosphogluconate dehydrogenase (decarboxylating) ** 6-phosphogluconate dehydrogen...")
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction LINOLEOYL-RXN ==
+
== Reaction RXN-9952 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** phosphogluconate dehydrogenase (decarboxylating)
 +
** 6-phosphogluconate dehydrogenase, decarboxylating
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.2 ec-3.1.2]
+
** [http://enzyme.expasy.org/EC/1.1.1.44 ec-1.1.1.44]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-18]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[LINOLEIC_ACID]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-2961]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[RIBULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ07211]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11815]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14331]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22264]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12698]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06127]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11912]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15062]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00878]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12699]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6917]], vernolate biosynthesis III:
+
* [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR100389
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10117 10117]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R08177 R08177]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01528 R01528]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-3.1.2}}
+
{{#set: common-name=phosphogluconate dehydrogenase (decarboxylating)|6-phosphogluconate dehydrogenase, decarboxylating}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-1.1.1.44}}
 +
{{#set: nb gene associated=11}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-9952

  • direction:
    • left-to-right
  • common-name:
    • phosphogluconate dehydrogenase (decarboxylating)
    • 6-phosphogluconate dehydrogenase, decarboxylating
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • OXIDATIVEPENT-PWY, pentose phosphate pathway (oxidative branch) I:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100389
  • RHEA:
  • LIGAND-RXN:





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